RNA id: TU274798



Basic Information


Item Value
RNA id TU274798
length 271
lncRNA type intronic
GC content 0.40
exon number 1
gene id G240458
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26667059 ~ 26667329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTTTATACTGGCTATGGTGtgtcaaaatggacaaacagtactattgcagCCTTTTCTAGTTTTTCCAGCAAGCACCCTCGTTTGGTTTGACGAGTTCCGCTAGgcgccagccgaactgaagcatgctgacgccaTTACTTAAACTGTGTACTAATCGTACCACATACTATATAGAACGTACTGATTTGTGAAAACAAAATGCAGTAAACAACAAATATCAGCATACTAGGCATCCTAcagagaatgtataatctaatggCAATTGCTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU274796 lncRNA downstream 2992 26662995 ~ 26664067 (-) True G240456
TU274772 lncRNA downstream 7711 26659071 ~ 26659348 (-) True G240438
TU274789 lncRNA downstream 28684 26638162 ~ 26638375 (-) True G240450
TU274780 lncRNA downstream 36975 26628274 ~ 26630084 (-) False G240445
TU274783 lncRNA downstream 36975 26628317 ~ 26630084 (-) True G240445
TU274803 lncRNA upstream 3299 26670628 ~ 26670901 (-) True G240463
TU274815 lncRNA upstream 31952 26699281 ~ 26699605 (-) True G240472
TU274842 lncRNA upstream 95384 26762713 ~ 26763620 (-) True G240497
TU274869 lncRNA upstream 118096 26785425 ~ 26828419 (-) True G240519
TU274931 lncRNA upstream 189740 26857069 ~ 26857277 (-) True G240574
XM_021594792.2 mRNA downstream 17069 26647025 ~ 26649990 (-) True LOC110516273
XM_021584202.2 mRNA downstream 29910 26636727 ~ 26637149 (-) True LOC110505173
XM_021594761.2 mRNA downstream 45261 26608152 ~ 26621798 (-) False LOC110516190
XM_021594751.2 mRNA downstream 45264 26608152 ~ 26621795 (-) False LOC110516190
XM_021594796.2 mRNA upstream 24409 26691738 ~ 26715464 (-) False LOC110516285
XM_021594801.2 mRNA upstream 24409 26691738 ~ 26715464 (-) True LOC110516285
XM_021584224.2 mRNA upstream 61745 26729074 ~ 26736469 (-) True LOC110505184
XM_021594818.2 mRNA upstream 145137 26812466 ~ 26817929 (-) True LOC110516341
XM_021594832.2 mRNA upstream 163847 26831176 ~ 26851721 (-) False LOC110516351
TU274740 other downstream 97537 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 842302 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1430692 25199088 ~ 25236367 (-) True LOC110515384
TU272443 other downstream 1714877 24936667 ~ 24952182 (-) False LOC110515208
TU274804 other upstream 7263 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 403726 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 410710 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 417011 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 444853 27112182 ~ 27112622 (-) True LOC110516667

Expression Profile