RNA id: TU274375


Basic Information

Item Value
RNA id TU274375
length 237
lncRNA type antisense_over
GC content 0.57
exon number 1
gene id G240094
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26698214 ~ 26698450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTGGCACCACGTTGAGGTGGACGATCTTGGTGACGTCAGTGTGGAACCCGTAGGAGGTGAAGGTGAGGGTGCGGTTGAAGATGCAGCGGTAGGTGCCCGTGTCGTTCCACGTCACGTTCAGGATGTAGATGGAGCCGTCCTGCAGGTCCTTGGTCTTCTTGCTGCCGTTCCAGTCCAGACGCTCATAGAAGCGCTCGTCCGGGATGTCGCTCATTAGATCCTCGTAGCTGTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274363 lncRNA upstream 31187 26666811 ~ 26667027 (+) True G240082
TU274361 lncRNA upstream 33397 26664450 ~ 26664817 (+) True G240080
TU274344 lncRNA upstream 75807 26611137 ~ 26622407 (+) True G240065
TU274331 lncRNA upstream 150395 26547238 ~ 26547819 (+) True G240052
TU274320 lncRNA upstream 163256 26533660 ~ 26534958 (+) True G240043
TU274376 lncRNA downstream 783 26699233 ~ 26699537 (+) True G240095
TU274378 lncRNA downstream 3705 26702155 ~ 26702405 (+) True G240097
TU274379 lncRNA downstream 4296 26702746 ~ 26703096 (+) True G240098
TU274383 lncRNA downstream 12553 26711003 ~ 26712290 (+) True G240102
TU274385 lncRNA downstream 15129 26713579 ~ 26714493 (+) True G240104
XM_036973624.1 mRNA upstream 7691 26654888 ~ 26690523 (+) False LOC110503999
XM_036973598.1 mRNA upstream 7691 26656537 ~ 26690523 (+) False LOC110503999
XM_036973605.1 mRNA upstream 7691 26656537 ~ 26690523 (+) False LOC110503999
XM_036973615.1 mRNA upstream 7691 26663077 ~ 26690523 (+) True LOC110503999
LOC110503991 mRNA upstream 61576 26634307 ~ 26636638 (+) True LOC110503991
XM_021594804.2 mRNA downstream 54387 26752837 ~ 26763638 (+) True LOC110516307
XM_021594810.2 mRNA downstream 70698 26769148 ~ 26797346 (+) False LOC110516329
XM_036973649.1 mRNA downstream 86586 26785036 ~ 26797346 (+) False LOC110516329
XM_036973651.1 mRNA downstream 167960 26866410 ~ 26890388 (+) False LOC110516464
XM_036973657.1 mRNA downstream 176615 26875065 ~ 26890388 (+) False LOC110516464
TU273986 other upstream 369883 26327408 ~ 26328331 (+) False G239752
TU273987 other upstream 370189 26327408 ~ 26328025 (+) True G239752
TU273930 other upstream 478031 26213642 ~ 26220183 (+) True G239697
TU273162 other upstream 1156601 25540769 ~ 25541613 (+) True G239026
TU272577 other upstream 1498980 25195287 ~ 25199234 (+) True G238540
TU274539 other downstream 352736 27051186 ~ 27051954 (+) True G240244
TU275097 other downstream 558138 27256588 ~ 27264393 (+) True LOC110516767
TU275557 other downstream 857722 27556172 ~ 27558532 (+) True G241150
TU275655 other downstream 1016593 27715043 ~ 27723794 (+) True LOC110516984
TU275657 other downstream 1048897 27747347 ~ 27749726 (+) False LOC110516993

Expression Profile