RNA id: TU274815



Basic Information


Item Value
RNA id TU274815
length 325
lncRNA type intronic
GC content 0.45
exon number 1
gene id G240472
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26699281 ~ 26699605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatccccactgtcaaacatggtggtggcagcaccatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU274803 lncRNA downstream 28380 26670628 ~ 26670901 (-) True G240463
TU274798 lncRNA downstream 31952 26667059 ~ 26667329 (-) True G240458
TU274796 lncRNA downstream 35214 26662995 ~ 26664067 (-) True G240456
TU274772 lncRNA downstream 39933 26659071 ~ 26659348 (-) True G240438
TU274789 lncRNA downstream 60906 26638162 ~ 26638375 (-) True G240450
TU274842 lncRNA upstream 63108 26762713 ~ 26763620 (-) True G240497
TU274869 lncRNA upstream 85820 26785425 ~ 26828419 (-) True G240519
TU274931 lncRNA upstream 157464 26857069 ~ 26857277 (-) True G240574
TU274936 lncRNA upstream 162157 26861762 ~ 26861967 (-) True G240579
TU274948 lncRNA upstream 174520 26874125 ~ 26874648 (-) True G240588
XM_021594792.2 mRNA downstream 49291 26647025 ~ 26649990 (-) True LOC110516273
XM_021584202.2 mRNA downstream 62132 26636727 ~ 26637149 (-) True LOC110505173
XM_021594761.2 mRNA downstream 77483 26608152 ~ 26621798 (-) False LOC110516190
XM_021594751.2 mRNA downstream 77486 26608152 ~ 26621795 (-) False LOC110516190
XM_021584224.2 mRNA upstream 29469 26729074 ~ 26736469 (-) True LOC110505184
XM_021594818.2 mRNA upstream 112861 26812466 ~ 26817929 (-) True LOC110516341
XM_021594832.2 mRNA upstream 131571 26831176 ~ 26851721 (-) False LOC110516351
XM_021594836.2 mRNA upstream 131571 26831176 ~ 26851721 (-) False LOC110516351
XM_036973677.1 mRNA upstream 131571 26831176 ~ 26851723 (-) False LOC110516351
TU274804 other downstream 24248 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 129759 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 874524 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1462914 25199088 ~ 25236367 (-) True LOC110515384
TU272443 other downstream 1747099 24936667 ~ 24952182 (-) False LOC110515208
TU275014 other upstream 371450 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 378434 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 384735 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 412577 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 455963 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile