RNA id: TU274967


Basic Information

Item Value
RNA id TU274967
length 480
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G240601
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26889876 ~ 26891172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGTTGTAAATCACAGTCAACACAGTACGGACAGTGGGTATGACAAGTAGACTGTACAACAATGgagtaagtacatttttcatagcaataataaaattaaaattaaaattaaatgaaCAAATATAATCTGCCTATGGCTGACATTATTCATGACAAATATCATTGTTGGACAGACAGTTAAAACTAATCCAAAACTCTAAATACGATgataaacaatgtaaaaataacatggctattatTTGATTTTAGTCAttagaggctcttatccagagcaattagggttaagtgccttgctcaagggcacatcggcagattttttaCTTAGTTGGCTCGgcgatttgaaccagcgacctttcggttagtggcccaacgctcttaaccgctaggctacctcccGCCCTAATAAAATCTATTCCATTTTAAATGTACAGCATGATCtcattttcatttaaaaaatccaTGACTTCTCACAGTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274950 lncRNA downstream 11860 26877236 ~ 26878016 (-) True G240590
TU274948 lncRNA downstream 15228 26874125 ~ 26874648 (-) True G240588
TU274936 lncRNA downstream 27909 26861762 ~ 26861967 (-) True G240579
TU274931 lncRNA downstream 32599 26857069 ~ 26857277 (-) True G240574
TU274869 lncRNA downstream 61457 26785425 ~ 26828419 (-) True G240519
TU274902 lncRNA upstream 14762 26905117 ~ 26906092 (-) True G240546
TU274900 lncRNA upstream 21129 26911484 ~ 26965713 (-) False G240545
TU274901 lncRNA upstream 21129 26911484 ~ 26914931 (-) True G240545
TU274981 lncRNA upstream 30407 26920762 ~ 26958098 (-) True G240615
TU274912 lncRNA upstream 38238 26928593 ~ 26978577 (-) False LOC110516475
XM_036973675.1 mRNA downstream 8834 26831176 ~ 26881042 (-) True LOC110516351
XM_036973676.1 mRNA downstream 8868 26831176 ~ 26881008 (-) False LOC110516351
XM_036973677.1 mRNA downstream 38153 26831176 ~ 26851723 (-) False LOC110516351
XM_021594832.2 mRNA downstream 38155 26831176 ~ 26851721 (-) False LOC110516351
XR_005042247.1 mRNA upstream 43023 26933378 ~ 26939411 (-) False LOC110516494
XR_005042248.1 mRNA upstream 43023 26933378 ~ 26939411 (-) False LOC110516494
XM_021594926.2 mRNA upstream 43023 26933378 ~ 26939575 (-) False LOC110516494
XM_021594930.2 mRNA upstream 43023 26933378 ~ 26939575 (-) False LOC110516494
XR_005042249.1 mRNA upstream 43023 26933378 ~ 26939575 (-) True LOC110516494
TU274804 other downstream 214843 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 320354 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 1065119 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1653509 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 1942871 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 180700 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 187684 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 193985 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 221827 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 265213 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile