RNA id: TU274900


Basic Information

Item Value
RNA id TU274900
length 2797
lncRNA type read_through
GC content 0.42
exon number 3
gene id G240545
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26911484 ~ 26965713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGTGATGTCGCTTCTGCAAACAATGAGGGGTGGTGTGGGAGGAATAACTGTTACATACTGTATTAATTTAGTCATACTAATACATGGAGATATAGAATGTATTTGGGGTGTATTTTCCTTACTGTTTTGGGTATGAGAGAACAGATAACACACTATATAGATAAACTGAGCGGGTCACATTCTCTGTTGtttactttatttatttgttgtttGGAACCAAAGAAAGATGGCTTTGCTTGAGGCGGGACAGACTTGTAAAATAAAGAGAGTGATCAAACATCATCATAGAGCTCATATTGTCATTAAGTGAAAACTGTGGTAATTTGCAGAAGGATTGCAGAATTCTGATCGGAATTATtgtgtcaaaaatataaaaaaaaaaaatcatcacaaTAACAATAATGAATACCACAAAGTAAAGAAAGTACAAATCTGCTTTCCAACACACTATGTGACAAACAAATTAGATAAGACATGAACAGCGCTTCTCCATTTTGTTTCCAGGTTTAGAAAGAAATTAACCCCCCCATGTGGCGTTCAAGAGAACTGACGACAGTAAGTGTTACTAAACTGATGTCCATATTGGCATGTCTCAACGTTGGGTAACACATCTTGAGCACTCTGACATTACTTCTAGTGACTAAACCATGTCAGAACAATTACATAAAATATGTTATTAACAGTCATGACAGCTGACATAAGCTTGACAGCTGACTTGACACCTTCATGGCACAAATCTTTGCTTCAGTCAGCTTATTGGCTTAGGATACCGCTAGCCAACTAATTTACATAAATATCCATTTGTGTCATGACAGTGTAAAGGGTTGTCAGTATTTTGACATCAGTTTTCACGACCGAAAATGAcatgtgttatgttatgacagCGTTATGTCACCCTTATGACAGCGTTATGTCACCCTTATGACAGAGAAGTCAGTTAAAGTGTTACCAAACCTGTATCCGACTTGCCTGTGTAAATCATTGTTGTAATACTgagcatgtactgtacataccgTAGTATTTTTACACATATGGCTGACAGCATAATAGTCATGCAGGGTATTTATTTACATAATGTATACTGGTATCTTTTTACCCATCCATATGCAGCTTATTAATATTGTATTAACAGTCATTGTTATCAAGTGATGCCATTAGTGAGCTTGGGGATTACATTACATGAGTTGATCACGTATATTTGAACAGCACAACCAACTGGTATATCAGCTTTAATGTTGTGCCACTCAAACGCCTCATCTGATACAACCGTATAGGATTAGGCTTCGATTTCACAATTCACAACCATTGAAGAAGACATTTTGGGAGAAGCGGTCTCCGGTAAAGTGATACTTTGAAACACTGTGATCAGTGTTCGCTGATCTTTCAGCActgtttgcacacacacacacacacattgtctcaACGAGATACATTTTGGCCTGCTGTGCAAGTGCTACCGTGGAGTCATGTATGCCAGATTGATCCAAAAAATGTATTCTAACCCATTGGTTCCCATTTAAGGATAAGTTAACACTTATCCTTAGCAAAACAGAGAAATCGTCCAAAAATGCTATAATTAAATCATGGGCAACAGCATAAACAGAACATTCTGTGTTAGCCCGGCACAGTTCCCGAAGAGCAAACCACAATTCAACCAGTGCTTATAATGCATAAGAACTAAAAAATCAGCCCACTTTCTTGGACGAACAGAACCTTGTGTTCAAGGCTGGACAAACCTCTAAGAGTATCCATCTTCTCTCTTTatataaaatcaaataaatattCATTTCTCATCATCATCAAAAAGCCACTGAGTCACAGCACACATCACTATTGAACTATATGTGGGAGCAGAATATGTGAGATGAAGATGACTGGCTTCAGTTGGATATGTATCAGGCCTGACGTTTGTTGAACACTGGTCAGTGTTGACAACCACTGGatcaggaagagagaagagatccTTCATTTCCTCCAGGTCCAgggtcagaaatagagataagaaAGTAAAAAGCACAAAATACACCCCTTTCCCAGACACTTCGACTGGCAGCGGACACAGTGGAGAAGGACTATAATGGACAGATCTAGATAGTTAGCCTGGTATCCAAGCTGATTGCGTTGCCTTTCACAGGAAAACTGGTGAGCGCAGCGTTCaatctggtttaaccaggctagctATAAGTATGATATAGGGTGACATACAGAAGGGGAGCCCCAGAAAATGTGTTACTGTGTCCCAAGCTTGATAGCAATGCCAACAATTAATGGTATAGAGATGGGAATAGCAACATTGAATCTagatgatacagtacagtaactaaAACATTGTACCTGTTATGAGGAAATGTTGTGACTATGACCAGTAGGGTAAGAGCTGGGAGACCGAGAGCTGCTGATAATACAAAGATCTTTTTACATTGTCCACTGGGCCGTGTTCCGACCTTGCAAGTAGCTACCAGCAGTCCTGGGTGGCGAGATGTCACTGGGGCTCCCCCTGGAGGCTTGGGGGTCAACTAACGGGGGCATCATTTGAAATGAGTCAGGGACGGGGGGAGACGATGGGGGATCTCGGTGTGATGGTGAAGGGTGGTGATGGTGTCCACGGGGGAGGGGGGAAGACGTTTGAAGAGGGGGTGAATGACGTGAGGAAGGGGGCGACAACATGGCTGCCACTGTGTCCCGCGGTGACGATGGGTCAGGGAAGGATCGCGATTCATTTGGCCTTGATCTCGGTGTAGTCGCTGCCGTCATCCCTGGAGCGCCCCCCCAGAAACTCCAGGGCGGCATAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274902 lncRNA downstream 5392 26905117 ~ 26906092 (-) True G240546
TU274966 lncRNA downstream 20312 26889876 ~ 26891172 (-) False G240601
TU274967 lncRNA downstream 21129 26889876 ~ 26890355 (-) True G240601
TU274950 lncRNA downstream 33468 26877236 ~ 26878016 (-) True G240590
TU274948 lncRNA downstream 36836 26874125 ~ 26874648 (-) True G240588
TU274997 lncRNA upstream 15697 26981410 ~ 26981767 (-) True G240630
TU274914 lncRNA upstream 26754 26992467 ~ 26994270 (-) True G240557
TU274999 lncRNA upstream 31347 26997060 ~ 26997405 (-) True G240632
TU274916 lncRNA upstream 35356 27001069 ~ 27001515 (-) True G240559
TU274907 lncRNA upstream 84539 27050252 ~ 27050600 (-) True LOC110516606
XM_036973675.1 mRNA downstream 30442 26831176 ~ 26881042 (-) True LOC110516351
XM_036973676.1 mRNA downstream 30476 26831176 ~ 26881008 (-) False LOC110516351
XM_036973677.1 mRNA downstream 59761 26831176 ~ 26851723 (-) False LOC110516351
XM_021594832.2 mRNA downstream 59763 26831176 ~ 26851721 (-) False LOC110516351
XM_021594912.2 mRNA upstream 4685 26970398 ~ 26978570 (-) False LOC110516475
XM_036973683.1 mRNA upstream 4685 26970398 ~ 26978570 (-) False LOC110516475
XM_036973684.1 mRNA upstream 4685 26970398 ~ 26978570 (-) False LOC110516475
XM_036973685.1 mRNA upstream 4685 26970398 ~ 26978570 (-) False LOC110516475
XR_002472386.2 mRNA upstream 4685 26970398 ~ 26978570 (-) False LOC110516475
TU274804 other downstream 236451 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 341962 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 1086727 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1675117 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 1964479 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 105342 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 112326 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 118627 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 146469 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 189855 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile