RNA id: TU274901


Basic Information

Item Value
RNA id TU274901
length 3424
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G240545
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26911484 ~ 26965713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATTTGCAACTAGAGACCGTAGCCTACCAGTTAGAGAGACGAGCCAGCAACCGGAGGGTTACCAGTTCCAATTCCGCGTCCGATGGGAAAACAGGAGGGTTTCTGGTATAAAATTCTAGATGCCATTGcctgccattgtgcccttgaACAACCCTCCACAACAACAGCTCCCCGGGCACCAAGTCACAGGTTACTGTTTTTTGGCATGAATCTcattctggaggcagctctgcagagtggtcaatAGCTGACACAGCCCCAAAGTCATAACATCTGATGTTAAACCTAATTAACCCTTGCCTTAACCACACAGCtaaacctaatgcctaaccttaaatgacattttccATTGCTTTACGTTTTTTGGTGTGTGTGGAAGCGCAGAAACCATTTTTATGTGAATGAATTAAAACCTTTTTCTGAGTTAATGTCTCTGGTtttatgcaacaacaaaaaaaagcaaCATTTTAACCAAATTATGTTGTATTTTAAGTAAAAGCACATAAGGAAGCTACAAGTTTTTGTTATCTTCCTCATGTTCAACTATGTTAATAAAGATGTTATGTCGATAATCAAGGTAACACATTTGCACATATTATCAAGTGAAATGGTTGAAAGAAAAGCTTTGTGTGATGTCGCTTCTGCAAACAATGAGGGCTGGTGTGGGAGGAATAACTGGTACATACTGTATTAATAAAGTCATACTAATACATGGAGATATAGAATGTATTTGGGGTGTATTTTCCTTACTGTTTTGGGTATGAGAGAACAGATAACACACTATATAGATAAACTGAGTGGGTCACATTCTCTGTTGtttactttatttatttgttgtttGGACCCAAAGAAAGATGGCTTTGCTTGAGGCGGGACAGACTTGTAAAATAAAGAGAGTGATCAAACATCATCATAGAGCTCATATTGTCATTAAGTGAAAACTGTGGTAATTTGCAGAAGGATTGCAGAATTCTGATCGGAATTATtgtgtcaaaaatataaaaaaaaaaaatcatcacaaTAACAATAATGAATACCACAAAGTAAAGAAAGTACAAATCTGCTTTCCAACACACTATGTGACAAACAAATTAGATAAGACATGAACAGCGCTTCTCCATTTTGTTTCCAGGTTTAGAAAGAAATTAACCCCCCCATGTGGCGTTCAAGAGAACTGACGACAGTAAGTGTTACTAAACTGATGTCCATATTGGCATGTCTCAACGTTGGGTAACACATCTTGAGCACTCTGACATTACTTCTAGTGACTAAACCATGTCAGAACAATTACATAAAATATGTTATTAACAGTCATGACAGCTGACATAAGCTTGACAGCTGACTTGACACCTTCATGGCACAAATCTTTGCTTCAGTCAGCTTATTGGCTTAGGATACCGCTAGCCAACTAATTTACATAAATATCCATTTGTGTCATGACAGTGTAAAGGGTTGTCAGTATTTTGACATCAGTTTTCACGACCGAAAATGAcatgtgttatgttatgacagCGTTATGTCACCCTTATGACAGCGTTATGTCACCCTTATGACAGAGAAGTCAGTTAAAGTGTTACCAAACCTGTATCCGACTTGCCTGTGTAAATCATTGTTGTAATACTgagcatgtactgtacataccgTAGTATTTTTACACATATGGCTGACAGCATAATAGTCATGCAGGGTATTTATTTACATAATGTATACTGGTATCTTTTTACCCATCCATATGCAGCTTATTAATATTGTATTAACAGTCATTGTTATCAAGTGATGCCATTAGTGAGCTTGGGGATTACATTACATGAGTTGATCACGTATATTTGAACAGCACAACCAACTGGTATATCAGCTTTAATGTTGTGCCACTCAAACGCCTCATCTGATACAACCGTATAGGATTAGGCTTCGATTTCACAATTCACAACCATTGAAGAAGACATTTTGGGAGAAGCGGTCTCCGGTAAAGTGATACTTTGAAACACTGTGATCAGTGTTCGCTGATCTTTCAGCActgtttgcacacacacacacacacattgtctcaACGAGATACATTTTGGCCTGCTGTGCAAGTGCTACCGTGGAGTCATGTATGCCAGATTGATCCAAAAAATGTATTCTAACCCATTGGTTCCCATTTAAGGATAAGTTAACACTTATCCTTAGCAAAACAGAGAAATCGTCCAAAAATGCTATAATTAAATCATGGGCAACAGCATAAACAGAACATTCTGTGTTAGCCCGGCACAGTTCCCGAAGAGCAAACCACAATTCAACCAGTGCTTATAATGCATAAGAACTAAAAAATCAGCCCACTTTCTTGGACGAACAGAACCTTGTGTTCAAGGCTGGACAAACCTCTAAGAGTATCCATCTTCTCTCTTTatataaaatcaaataaatattCATTTCTCATCATCATCAAAAAGCCACTGAGTCACAGCACACATCACTATTGAACTATATGTGGGAGCAGAATATGTGAGATGAAGATGACTGGCTTCAGTTGGATATGTATCAGGCCTGACGTTTGTTGAACACTGGTCAGTGTTGACAACCACTGGatcaggaagagagaagagatccTTCATTTCCTCCAGGTCCAgggtcagaaatagagataagaaAGTAAAAAGCACAAAATACACCCCTTTCCCAGACACTTCGACTGGCAGCGGACACAGTGGAGAAGGACTATAATGGACAGATCTAGATAGTTAGCCTGGTATCCAAGCTGATTGCGTTGCCTTTCACAGGAAAACTGGTGAGCGCAGCGTTCaatctggtttaaccaggctagctATAAGTATGATATAGGGTGACATACAGAAGGGGAGCCCCAGAAAATGTGTTACTGTGTCCCAAGCTTGATAGCAATGCCAACAATTAATGGTATAGAGATGGGAATAGCAACATTGAATCTagatgatacagtacagtaactaaAACATTGTACCTGTTATGAGGAAATGTTGTGACTATGACCAGTAGGGTAAGAGCTGGGAGACCGAGAGCTGCTGATAATACAAAGATCTTTTTACATTGTCCACTGGGCCGTGTTCCGACCTTGCAAGTAGCTACCAGCAGTCCTGGGTGGCGAGATGTCACTGGGGCTCCCCCTGGAGGCTTGGGGGTCAACTAACGGGGGCATCATTTGAAATGAGTCAGGGACGGGGGGAGACGATGGGGGATCTCGGTGTGATGGTGAAGGGTGGTGATGGTGTCCACGGGGGAGGGGGGAAGACGTTTGAAGAGGGGGTGAATGACGTGAGGAAGGGGGCGACAACATGGCTGCCACTGTGTCCCGCGGTGACGATGGGTCAGGGAAGGATCGCGATTCATTTGGCCTTGATCTCGGTGTAGTCGCTGCCGTCATCCCTGGAGCGCCCCCCCAGAAACTCCAGGGCGGCATAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274902 lncRNA downstream 5392 26905117 ~ 26906092 (-) True G240546
TU274966 lncRNA downstream 20312 26889876 ~ 26891172 (-) False G240601
TU274967 lncRNA downstream 21129 26889876 ~ 26890355 (-) True G240601
TU274950 lncRNA downstream 33468 26877236 ~ 26878016 (-) True G240590
TU274948 lncRNA downstream 36836 26874125 ~ 26874648 (-) True G240588
TU274981 lncRNA upstream 5831 26920762 ~ 26958098 (-) True G240615
TU274912 lncRNA upstream 13662 26928593 ~ 26978577 (-) False LOC110516475
TU274913 lncRNA upstream 13662 26928593 ~ 26966977 (-) True LOC110516475
TU274983 lncRNA upstream 19867 26934798 ~ 26972354 (-) True G240617
TU274997 lncRNA upstream 66479 26981410 ~ 26981767 (-) True G240630
XM_036973675.1 mRNA downstream 30442 26831176 ~ 26881042 (-) True LOC110516351
XM_036973676.1 mRNA downstream 30476 26831176 ~ 26881008 (-) False LOC110516351
XM_036973677.1 mRNA downstream 59761 26831176 ~ 26851723 (-) False LOC110516351
XM_021594832.2 mRNA downstream 59763 26831176 ~ 26851721 (-) False LOC110516351
XR_005042247.1 mRNA upstream 18447 26933378 ~ 26939411 (-) False LOC110516494
XR_005042248.1 mRNA upstream 18447 26933378 ~ 26939411 (-) False LOC110516494
XM_021594926.2 mRNA upstream 18447 26933378 ~ 26939575 (-) False LOC110516494
XM_021594930.2 mRNA upstream 18447 26933378 ~ 26939575 (-) False LOC110516494
XR_005042249.1 mRNA upstream 18447 26933378 ~ 26939575 (-) True LOC110516494
TU274804 other downstream 236451 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 341962 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 1086727 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1675117 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 1964479 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 156124 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 163108 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 169409 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 197251 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 240637 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile