RNA id: TU274999


Basic Information

Item Value
RNA id TU274999
length 346
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G240632
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26997060 ~ 26997405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaaattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctggattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatcttcgtcccagtctcaggtcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274914 lncRNA downstream 2790 26992467 ~ 26994270 (-) True G240557
TU274997 lncRNA downstream 15293 26981410 ~ 26981767 (-) True G240630
TU274912 lncRNA downstream 18483 26928593 ~ 26978577 (-) False LOC110516475
TU274983 lncRNA downstream 24706 26934798 ~ 26972354 (-) True G240617
TU274913 lncRNA downstream 30083 26928593 ~ 26966977 (-) True LOC110516475
TU274916 lncRNA upstream 3664 27001069 ~ 27001515 (-) True G240559
TU274907 lncRNA upstream 52847 27050252 ~ 27050600 (-) True LOC110516606
TU275020 lncRNA upstream 78843 27076248 ~ 27076746 (-) False LOC110516631
TU275033 lncRNA upstream 108609 27106014 ~ 27106764 (-) True G240665
TU275056 lncRNA upstream 157374 27154779 ~ 27155085 (-) False LOC110516678
XM_021594912.2 mRNA downstream 18490 26970398 ~ 26978570 (-) False LOC110516475
XM_036973696.1 mRNA upstream 52587 27049992 ~ 27064455 (-) False LOC110516606
XM_036973697.1 mRNA upstream 52587 27049992 ~ 27064456 (-) False LOC110516606
XM_021595000.2 mRNA upstream 52588 27049993 ~ 27064454 (-) False LOC110516606
XM_021595003.2 mRNA upstream 52588 27049993 ~ 27064455 (-) False LOC110516606
XM_036973698.1 mRNA upstream 56364 27053769 ~ 27064472 (-) False LOC110516606
TU274804 other downstream 322027 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 427538 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 1172303 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1760693 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 2050055 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 73650 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 80634 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 86935 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 114777 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 158163 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile