RNA id: TU274916


Basic Information

Item Value
RNA id TU274916
length 447
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G240559
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27001069 ~ 27001515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattatttatttcagcttttatttatttcatcacattcccagtgggtcagaagtttacatacactgaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaacctttcggttagccttccacaagcttcccacaataagttgggtgtaggtctccttgcttgcacatgctttttcagttcggcccacaaattttgaagtcagggctttgtgatggccaatccaataccttgcttttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgttcactTGGaaggacccatttgcgaccaagctttaacttcctgactgatggcttgagatgttgcttcaatataaccacataattttttgcctcatgacgccatctattttgtgaagtgcaccagtccctcccgcagcaaagcaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274999 lncRNA downstream 3664 26997060 ~ 26997405 (-) True G240632
TU274914 lncRNA downstream 6799 26992467 ~ 26994270 (-) True G240557
TU274997 lncRNA downstream 19302 26981410 ~ 26981767 (-) True G240630
TU274912 lncRNA downstream 22492 26928593 ~ 26978577 (-) False LOC110516475
TU274907 lncRNA upstream 48737 27050252 ~ 27050600 (-) True LOC110516606
TU275020 lncRNA upstream 74733 27076248 ~ 27076746 (-) False LOC110516631
TU275033 lncRNA upstream 104499 27106014 ~ 27106764 (-) True G240665
TU275056 lncRNA upstream 153264 27154779 ~ 27155085 (-) False LOC110516678
TU275057 lncRNA upstream 153320 27154835 ~ 27155496 (-) False LOC110516678
XM_021594912.2 mRNA downstream 22499 26970398 ~ 26978570 (-) False LOC110516475
XM_036973696.1 mRNA upstream 48477 27049992 ~ 27064455 (-) False LOC110516606
XM_036973697.1 mRNA upstream 48477 27049992 ~ 27064456 (-) False LOC110516606
XM_021595000.2 mRNA upstream 48478 27049993 ~ 27064454 (-) False LOC110516606
XM_021595003.2 mRNA upstream 48478 27049993 ~ 27064455 (-) False LOC110516606
XM_036973698.1 mRNA upstream 52254 27053769 ~ 27064472 (-) False LOC110516606
TU274804 other downstream 326036 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 431547 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 1176312 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1764702 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 2054064 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 69540 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 76524 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 82825 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 110667 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 154053 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile