RNA id: TCONS_00030241


Basic Information

Item Value
RNA id TCONS_00030241
length 1564
lncRNA type inter_gene
GC content 0.36
exon number 8
gene id XLOC_014836
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 27463930 ~ 27470389 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTGCCATGATCCTTCATTATGCGGATGTTTGTGGGCTAGGAGACAGTGACAAATTTGCTTCTTTCGTATTAGTTAAAATATCTTTTtggttttatattatatatacacgtTTACTTTGAAAATGTCGATAGTCTGTGCGTTTACCTGAAAGCAGTATCTGTAAAATAACTGACGTTGGCTGCTCACGGCCTCTCCCTCGTGGTcgtaattttatttagttaagcATTTTTATCGAATATGACTTGATAATTTTTTAGTAAGCTTTTGAAAATGCTTGCTGCTTATAAATATTGTTGTGTAGAGAACCAAAGTCCAAGAAACGGTGCGAAAGGGCAAACGCAGATTTCTTGTTGGATGAGAGAAATTGAGGCTGGTAGACGATGCCAACAGTTGACGACCAATTGgttgGATCAAAGAAACTGAGGCTGGTAGTCGATGTCAACAGTTGACAATAAAATGGTTAGATGAGTGAAATCAGTTGCCTTGTAGCAGATGCCATCTTTCAGCAAAAAAAAGAGTTTGGATGAGAAAAACAGAGGCTGCCAGGTAGCTGATGCCAACAATAGGCGACCAATGGTTTGGATCAAACTGAAGCTGCTAGATAGCTGATGCCAACAATACACAGCCAATAGGTGAGAATGAGTTTAAGCAAAATCTTTTAAAGAAATGCCATGTTATGATGAATCTTTAGACTAGAGTCTCTGATTTCTCCATGAAGCTCTTCACAGTGCACTGAACACATGCAGTACTGCTTAAGACTAATTTGAAGTGGCTTGAATGTTTCTAAAATGTAATAACTTTTATAGGTTGAATGGAACAAAAGCCTGCTGGCTGATTCTAAGTTGACATCCAATGGGTAAGAAGGATCGTCAATGAAAGCTTCACAAATTAGGATAAATTTAcacagcaattttttttatatattttttgtagtttGCGCTTCTGAAAAGTTTCACTTGTAAAAGTCAACACTGTCAAAAAGATCCTCATTCACAATTCAGTGAAAAAAGCTGAAATTGAGCATTTCAGACTGGTAGTTGGTTTAAATGTTGcacgtgaattttttttttcaagcttaCACTCATCGTAACCATTATTTCCAATAAATTGATCTCTTGAATAGAAACGTATGTGAATTTTCAGGCCCCAAGTCACatgtaaatgaacaaaaatatttttattcattttcaaaagcatttgtcCATTAATGGTCAGTTGCAGGTAATGAGTATTCATAAAACTAGAGTTTCTTTCTTTTCAAGGTTTTCAACTACAGGGTTCGAAGCCAACATGGATGTCTTGGATTCATGAATCTGCTTAAAGgttGACGAGATGCCAGTGAAGGGGTGCTGCATACACATGAATGCGGAGCCGTgATGTGACCGAAGAGGAGCTGTGACTGGTTTGCTGCACAATGGTGAATTAAAATGATATACATCAATTTAAATGCTTGTTTAGTGGCATTCAATAGACTGTTTGAGTTAATTTTctcattttcagttttataaactGCTTTTTCAACAGAGTATTGCTTTTAATAAACATCAGAACTAAAGTGAAAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0021536 diencephalon development biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043583 ear development biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0006396 RNA processing biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0043049 otic placode formation biological_process
GO:0042471 ear morphogenesis biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0072175 epithelial tube formation biological_process
GO:0048839 inner ear development biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010467 gene expression biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0035148 tube formation biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0021983 pituitary gland development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030916 otic vesicle formation biological_process
GO:0060322 head development biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030238 lncRNA downstream 319 27453552 ~ 27463611 (-) False XLOC_014835
TCONS_00029277 lncRNA downstream 1148 27453552 ~ 27462782 (-) False XLOC_014835
TCONS_00029266 lncRNA downstream 129581 27333346 ~ 27334349 (-) False XLOC_014832
TCONS_00029263 lncRNA downstream 149268 27313718 ~ 27314662 (-) False XLOC_014832
TCONS_00029258 lncRNA downstream 457167 26991921 ~ 27006763 (-) True XLOC_014829
TCONS_00029298 lncRNA upstream 102471 27571706 ~ 27573862 (-) False XLOC_014839
TCONS_00029299 lncRNA upstream 102471 27571706 ~ 27574710 (-) False XLOC_014839
TCONS_00030256 lncRNA upstream 331820 27801055 ~ 27802544 (-) False XLOC_014845
TCONS_00029784 lncRNA upstream 332962 27802197 ~ 27802557 (-) True XLOC_014845
TCONS_00029312 lncRNA upstream 387488 27856723 ~ 27858015 (-) True XLOC_014847
TCONS_00029278 mRNA downstream 1210 27456967 ~ 27462720 (-) True XLOC_014835
TCONS_00029276 mRNA downstream 15324 27399168 ~ 27448606 (-) True XLOC_014834
TCONS_00029275 mRNA downstream 18183 27399168 ~ 27445747 (-) False XLOC_014834
TCONS_00029274 mRNA downstream 68399 27368245 ~ 27395531 (-) True XLOC_014833
TCONS_00029273 mRNA downstream 72751 27366932 ~ 27391179 (-) False XLOC_014833
TCONS_00029290 mRNA upstream 53190 27522425 ~ 27542277 (-) False XLOC_014837
TCONS_00029291 mRNA upstream 53190 27522425 ~ 27542433 (-) True XLOC_014837
TCONS_00029292 mRNA upstream 77166 27546401 ~ 27564980 (-) False XLOC_014838
TCONS_00029293 mRNA upstream 77166 27546401 ~ 27570363 (-) False XLOC_014838
TCONS_00029294 mRNA upstream 79224 27548459 ~ 27550768 (-) False XLOC_014838
TCONS_00029268 other downstream 127301 27334530 ~ 27336629 (-) False XLOC_014832
TCONS_00029261 other downstream 291100 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029249 other downstream 626806 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029233 other downstream 1945390 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029225 other downstream 2314946 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029297 other upstream 102471 27571706 ~ 27575094 (-) True XLOC_014839
TCONS_00029303 other upstream 112515 27581750 ~ 27584737 (-) True XLOC_014841
TCONS_00029305 other upstream 120100 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029320 other upstream 972606 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029333 other upstream 2315860 29785095 ~ 29785212 (-) True XLOC_014865

Expression Profile

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