RNA id: TU274646



Basic Information


Item Value
RNA id TU274646
length 303
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G240324
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27154686 ~ 27155500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGATAATCTAAATGTGCCACATAACTacttggtactgtatgtataatcaTGCAAAATTATATCAAGCGGATACCATATCATTGTGCCATTATCAGTCAAGCAGTATGTTCATGCTTGTCTTGTTATACAATGTAAGAGCTCTCTTCCACTCCATGACATAACGCTGATCCAAGCCATTAGTGCTAATGATCTGGACCAGAGCTATCCATGACATACCACACTGAGAGATGAACTCAGATGATCTCCAAGTAGATAGCTGTTTCAGTGTTATTGTCATTGTAGGCAGGGCTTTGTCTGTCTCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU274647 lncRNA upstream 64 27154686 ~ 27155089 (+) False G240324
TU274651 lncRNA upstream 64 27154757 ~ 27155089 (+) False G240324
TU274637 lncRNA upstream 11631 27142470 ~ 27143522 (+) True G240316
TU274625 lncRNA upstream 22532 27130019 ~ 27132621 (+) True G240304
TU274573 lncRNA upstream 78076 27076865 ~ 27077077 (+) True G240272
TU274657 lncRNA downstream 6710 27162165 ~ 27162583 (+) True G240329
TU274658 lncRNA downstream 7873 27163328 ~ 27163528 (+) True G240330
TU274660 lncRNA downstream 8259 27163714 ~ 27164472 (+) True G240331
TU274661 lncRNA downstream 9095 27164550 ~ 27164988 (+) True G240332
TU274662 lncRNA downstream 9629 27165084 ~ 27165362 (+) True G240333
XM_036973692.1 mRNA upstream 106477 27016458 ~ 27048676 (+) True si:dkey-24p1.1
XM_021584238.2 mRNA upstream 140926 27012977 ~ 27014227 (+) True irgq2
XM_021594977.2 mRNA upstream 144072 27004855 ~ 27011081 (+) False LOC110516537
XM_021584252.2 mRNA downstream 28328 27183783 ~ 27185128 (+) True LOC110505196
XM_021595061.2 mRNA downstream 29927 27185382 ~ 27195269 (+) False LOC110516690
XM_021595070.2 mRNA downstream 29927 27185382 ~ 27195271 (+) False LOC110516690
XM_021595075.2 mRNA downstream 29927 27185382 ~ 27195271 (+) True LOC110516690
LOC110504003 mRNA downstream 42414 27197869 ~ 27200027 (+) False LOC110504003
TU274539 other upstream 103199 27051186 ~ 27051954 (+) True G240244
TU273986 other upstream 826822 26327408 ~ 26328331 (+) False G239752
TU273987 other upstream 827128 26327408 ~ 26328025 (+) True G239752
TU273930 other upstream 934970 26213642 ~ 26220183 (+) True G239697
TU273162 other upstream 1613540 25540769 ~ 25541613 (+) True G239026
TU275097 other downstream 101133 27256588 ~ 27264393 (+) True LOC110516767
TU275557 other downstream 400717 27556172 ~ 27558532 (+) True G241150
TU275655 other downstream 559588 27715043 ~ 27723794 (+) True LOC110516984
TU275657 other downstream 591892 27747347 ~ 27749726 (+) False LOC110516993
TU277370 other downstream 1876256 29031711 ~ 29034714 (+) True LOC110517275

Expression Profile