RNA id: TU275616



Basic Information


Item Value
RNA id TU275616
length 234
lncRNA type intronic
GC content 0.43
exon number 1
gene id G241205
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27636538 ~ 27636771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagttggaccgcagagagaaggaaaagcagccaacaagcgctcagaatatgtgggaactccttgtagactgctggaaaagcattccagatgacaacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggctaccttgaagatagttttgatttgtttaacacttttttggttactacatgattccatgtgtgtcatttcatagtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU275612 lncRNA upstream 4093 27632246 ~ 27632445 (+) True G241201
TU275572 lncRNA upstream 61375 27574891 ~ 27575163 (+) True G241165
TU275570 lncRNA upstream 63633 27572685 ~ 27572905 (+) True G241163
TU275565 lncRNA upstream 68493 27567830 ~ 27568045 (+) True G241158
TU275562 lncRNA upstream 71326 27565007 ~ 27565212 (+) True G241155
TU275618 lncRNA downstream 995 27637766 ~ 27637999 (+) True G241207
TU275619 lncRNA downstream 1306 27638077 ~ 27638291 (+) True G241208
TU275624 lncRNA downstream 7113 27643884 ~ 27644788 (+) True G241213
TU275659 lncRNA downstream 61691 27698462 ~ 27702028 (+) True G241246
TU275683 lncRNA downstream 97376 27734147 ~ 27734398 (+) True G241268
XM_021595210.2 mRNA upstream 43625 27588215 ~ 27592913 (+) False si:dkeyp-97a10.2
XM_021595208.2 mRNA upstream 43625 27588292 ~ 27592913 (+) False si:dkeyp-97a10.2
XM_021595216.2 mRNA upstream 43625 27588459 ~ 27592913 (+) True si:dkeyp-97a10.2
XM_021595197.2 mRNA upstream 53082 27575811 ~ 27583456 (+) False LOC110516883
XM_021581685.2 mRNA downstream 46304 27683075 ~ 27696630 (+) False dhdds
XM_036963393.1 mRNA downstream 46304 27683075 ~ 27696630 (+) False dhdds
NM_001159336.2 mRNA downstream 46996 27683767 ~ 27696622 (+) False dhdds
XM_036963408.1 mRNA downstream 47551 27684322 ~ 27696630 (+) True dhdds
XR_005042471.1 mRNA downstream 69214 27705985 ~ 27723794 (+) False LOC110516984
TU275557 other upstream 78006 27556172 ~ 27558532 (+) True G241150
TU275097 other upstream 372145 27256588 ~ 27264393 (+) True LOC110516767
TU274539 other upstream 584584 27051186 ~ 27051954 (+) True G240244
TU273986 other upstream 1308207 26327408 ~ 26328331 (+) False G239752
TU275655 other downstream 78272 27715043 ~ 27723794 (+) True LOC110516984
TU275657 other downstream 110576 27747347 ~ 27749726 (+) False LOC110516993
TU277370 other downstream 1394940 29031711 ~ 29034714 (+) True LOC110517275
TU278253 other downstream 2031608 29668379 ~ 29690796 (+) True G243679
TU278893 other downstream 2495628 30132399 ~ 30137564 (+) True G244292

Expression Profile