RNA id: TU276573


Basic Information

Item Value
RNA id TU276573
length 1726
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G242083
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28251000 ~ 28254016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGACACTCTTGGGATATTTATTGGTAGTATGATGACACAAGAATACAGGCTGTTGCAGTTTTGACTGGGCCACAAATTGACCGCATTCCCTCTTGCACATGTAACTTCTTAGTCATTGCTACATCCTAATGCCAGAAATGAACTGCTTCTTGTATTTCACTCCTCAGTAACTCTAATTTAACCCCATGAAAACTAACTGGCTGAACCACCATACAaacacaacccactgggcacacactggtcgAATCAACGTCGTTTCCATATCATGTGGAACCAGCGTGGAaaagacattgaattgacgtctgtgcccagttggAATCCTCTCTTAGGGCAACAAAACCAACACTCCTTCCTTCCTTACATCTCCACTGCATCGGGCGGAGGCTTCTCGCCGTGCTTGTACACGCTCACGGTCACGTTGACCGTCTGAGTGCCGTACTGGTTGCGCACAAAGATGCTGTAGTTGCCCGTGTCCTCGCTAGTCACGTTGTTTACAGTCAGAGTGCTGCACTTATTCTCGTTGGCGATGTTGAACTGGCCCCCCGAGACGATGCCTTTGTCGTTCCTCAGCCAGAACATCTCTGGGGCAGGGTCACCATCAGTGAAGCAGGTCAGACAcagagactTCTCCATGATAGCCACCACATCTGGGAGCCCCTTGGTCACCCTGGCCCGATCTAAAGCAAATGAGAAGGACATTGACTCCCTTTTAATCATCCACAGGAAGCTCATTCAATCATTCCAGTGTACAGAAAATGCAATTATTAAGAAACAATGAAAGAGTAGGCCACTCACTTTTCTCAGCAACCGCCACTTGCCTTTGTAGCAAAAAGCAAGGGTAAAAACTggtaaatacatttgcaaatggtTTCATATCCATTGCCATACTATATGTCAACTCATCAATATTGAATAAAGAACCGTTTTCTGTTTGTCCATGTGAGAACAGTGATAGCAAATAGTACCTGCAATTGTTTGTGTTAGTGTTTACCACTGCAAGCCATGCTGGGCACGCACCATCAATATGGTACTGCACTTACTTCAACCTCTGGTATTCCAACAGAGCATCAGCAAAGGCTttttaaagagagaaagagagagataattcAATATAGATTACTGTAAAAGTATTTAGGAAGAGTGTAATATTCATTAACTGCCTGTCTCGGAAGATGTGAATGTAGATCAAGATTGCAGACACATTGAATTATAACTGAGTAATAATAGTccaattcggaagtttacattctaGCTCTGAAGACATTGACATGAATCTGAAGCAGTAAAACCCCCTGTAATGAAGCCTATTTCGCTTAACTGCTTTGAGACGATAGTGCTTTTTGAGTGAATCAGACTGGTCAGACTAACCTTGTCCAGATAGGTCTAGTGAGCGGGTGTGCTTTTCTTGACCATCAAACATCTCCAGAGTGTACTTCCCCTTATCGTTCTCCGTGGGCGCAAAGACCTCGACCCACAGCTTCTGCATACTGCTGCCAGGCTTACACCTCTCCAACTGGTCAATCCTACTCTCCCTGGTACATTGAAGTGCCAGCTGGTCTTCATGTAGCTGATATAGTACTTGAGAGAGCAGTAGAGCTTGAAGCCCATAGCAGTGCATTGAATCCTCACTGGGCCTGCAGACAGCGCTGTGccacagagagaggaaaaagtcAAATTCAGAGAGATGATACTCTGTGACAGAATGTCATTGTTGGGATATTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276534 lncRNA downstream 42321 28207295 ~ 28208679 (-) True G242045
TU276532 lncRNA downstream 46158 28204634 ~ 28204842 (-) True G242043
TU276432 lncRNA downstream 57191 28104707 ~ 28193809 (-) True G241970
TU276510 lncRNA downstream 70723 28175798 ~ 28180277 (-) True G242022
TU276430 lncRNA downstream 147981 28102143 ~ 28103019 (-) True G241968
TU276497 lncRNA upstream 826 28254842 ~ 28256509 (-) False G242021
TU276508 lncRNA upstream 826 28254842 ~ 28256509 (-) False G242021
TU276503 lncRNA upstream 1141 28255157 ~ 28256509 (-) False G242021
TU276504 lncRNA upstream 1141 28255157 ~ 28256509 (-) False G242021
TU276505 lncRNA upstream 1141 28255157 ~ 28256509 (-) False G242021
XM_021595258.2 mRNA downstream 463520 27769884 ~ 27787480 (-) True si:ch211-107n13.1
XM_021595227.2 mRNA downstream 568083 27659143 ~ 27682917 (-) False ago1
XM_021595321.2 mRNA upstream 21751 28275767 ~ 28280077 (-) False LOC110517114
XM_021595369.2 mRNA upstream 89728 28343744 ~ 28352096 (-) False LOC110517198
XM_036973742.1 mRNA upstream 89728 28343744 ~ 28353662 (-) True LOC110517198
XR_002472529.2 mRNA upstream 465524 28719540 ~ 28725294 (-) False LOC110517222
LOC110517244 mRNA upstream 527580 28781596 ~ 28786278 (-) False LOC110517244
TU275290 other downstream 1065895 27184660 ~ 27185105 (-) True G240906
TU275055 other downstream 1092336 27155568 ~ 27158664 (-) True LOC110516678
TU274911 other downstream 1138378 27112182 ~ 27112622 (-) True LOC110516667
TU275019 other downstream 1165940 27084340 ~ 27085060 (-) True LOC110516631
TU275018 other downstream 1171056 27078039 ~ 27079944 (-) False LOC110516631
TU276496 other upstream 1141 28255157 ~ 28256509 (-) False G242021
TU276553 other upstream 21756 28275772 ~ 28280045 (-) True LOC110517114
TU276998 other upstream 465438 28719454 ~ 28725203 (-) True LOC110517222
TU277045 other upstream 472954 28726970 ~ 28730375 (-) True G242539
TU277105 other upstream 527584 28781600 ~ 28786278 (-) False LOC110517244

Expression Profile