RNA id: TU276619


Basic Information

Item Value
RNA id TU276619
length 2711
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G242121
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28337383 ~ 28340093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTTGAATGTATAGCCAGGAATCTAAGAGTGAAGCATGGGAAGTTGCTGTACTGGACAGATGGCTTACTTACTAGGTTCCCGCTTGTCTACCGTCTGAAGATACTATAGGCTGTTGTTGGAGACTCCATAGCCCCCATGagagatgtttggtgcagttaATCTGATTTTTGATGATCGTGTTATATATAGGCAATGTGATGGGAGTTTATTTTGAAATCAGTTACTGGTTCTGGTATCCCCCAAACAACATAACGCCATGGCACACAACTCTTTCAgatctatgttttttttttactcttgtAATGCAATCAATGGGTCATGTCCGATTTCATACTCTGGTGCTTCCCCTCTGTAATTAAGTTATCTCTGGCAGTTGACAACATTTGTATCCATTTACAAGAAATCAATTACTCTGGCTTGTGGCAATTgaagtcagtcaattcaggaagtgatatGAATTTTTAAAATCCAAACTTGTCACATAAATAGCGTCTCCTTTTCAGAAAATAGATTCCCTTTTTTCAATCATTCAATTGGAATTTCAGTTAACTTCTAAATTGACTGCCTCAATTTGAAATGAGCTCAAACCTGATTACCACAGATGTTAagggtacagttgaagtcggaagtttacataaacttaggttggagtcattaaaacttgtttttcaaccactccacatgtttcttgttgacaaactatagttttggcaagtcggttaggacatctactttgtgcatgacacaagtacttatttcaacaattgtttacagaattATTTCACTTGcagtataattcactgtatcacaagtccaatgggtcagaagtttacatacactaaattgactgtgcctttaaacagcttgaaaaattccagaaaatgatgtcatggctttagaagcttctgataggctaattgagattatttgagtgaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacattatgggaaaatcaaagaaatcagccaagacctcagaaaaaacattgtaaacctccagaagtctggttcatcattgtgagcaatttccaaaggcatgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccatcataccgctcaggaaggagacgtgttctgtctcctagatatgaacATACTTTGGaatgaaaagtgcaaataaatcccacaacaacagcaaaggcccttgtgaagatgctggaggaaacaggttcaaaagtatatccacagtaaaacgagtcctatatcaacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactacggtttgcaactacacatggggacaaagatcgtactttttgaagaaatgtcctctggtctgatgaaacgaaaataaaactgttggccataatgaccattgttatgtttggaggaaaaaggggtagacttgcaagccgaagaacaccattccaactgtgaagcacaggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgaacttcaaaaaattgatggcatcatgaggatggaaaattatgtggatattttgaagcaacaagttcatcagtcaggaagttaaagcttggtcgcaaatgggtcatccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatgtcttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggggtgtcctcggatggggccacagtgactcctgacccctcctgtctcagcctccagtatttatgctgcagcagtttgtgtcggggggctagggtcaatttgttatatctggagtacttctcctgttctatccggtgtcctgtgtgaatttaattatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgcctcaagactacctgacatgatgattccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgtctgtgattaattattatttgaccatgctggtcatttatgaacatatgaacatcttggccatgttctgttataatctccacccagcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacaacagcattgcttgctgtttggggttttagggtttctgtacagcactttgagatatcagctgatgtacaaagggctatataaattaatgtgatttgattaaggacaacaaagtcaaggtatgggagtggctatcacaaagtcctgacctcaatcctatagaacatttgtgggcagaactgaaaaagcatgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaatttattgtgggaagcttgtagaaggctacccgaaacgtttgacccaagttaaacaatttaaaggaaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaggaaattaaagctgaaataaatcattctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276565 lncRNA downstream 4013 28310855 ~ 28333370 (-) True G242076
TU276589 lncRNA downstream 30446 28297304 ~ 28306937 (-) True G242092
TU276568 lncRNA downstream 40193 28272677 ~ 28297190 (-) True G242078
TU276504 lncRNA downstream 80874 28255157 ~ 28256509 (-) False G242021
TU276624 lncRNA upstream 29051 28369144 ~ 28369386 (-) True G242126
TU276625 lncRNA upstream 30877 28370970 ~ 28371221 (-) True G242127
TU276627 lncRNA upstream 32601 28372694 ~ 28372894 (-) True G242129
TU276631 lncRNA upstream 43064 28383157 ~ 28383992 (-) True G242133
TU276680 lncRNA upstream 86912 28427005 ~ 28427289 (-) True G242182
XM_021595321.2 mRNA downstream 57306 28275767 ~ 28280077 (-) False LOC110517114
XM_021595258.2 mRNA downstream 549903 27769884 ~ 27787480 (-) True si:ch211-107n13.1
XM_021595233.2 mRNA downstream 654466 27659143 ~ 27682917 (-) False ago1
XM_021595369.2 mRNA upstream 3651 28343744 ~ 28352096 (-) False LOC110517198
XM_036973742.1 mRNA upstream 3651 28343744 ~ 28353662 (-) True LOC110517198
XR_002472529.2 mRNA upstream 379447 28719540 ~ 28725294 (-) False LOC110517222
LOC110517244 mRNA upstream 441503 28781596 ~ 28786278 (-) False LOC110517244
XM_021595405.2 mRNA upstream 551327 28891420 ~ 28921524 (-) False rspo1
TU276553 other downstream 57338 28275772 ~ 28280045 (-) True LOC110517114
TU276496 other downstream 80874 28255157 ~ 28256509 (-) False G242021
TU275290 other downstream 1152278 27184660 ~ 27185105 (-) True G240906
TU275055 other downstream 1178719 27155568 ~ 27158664 (-) True LOC110516678
TU274911 other downstream 1224761 27112182 ~ 27112622 (-) True LOC110516667
TU276998 other upstream 379361 28719454 ~ 28725203 (-) True LOC110517222
TU277045 other upstream 386877 28726970 ~ 28730375 (-) True G242539
TU277105 other upstream 441507 28781600 ~ 28786278 (-) False LOC110517244
TU277309 other upstream 605648 28945741 ~ 28946292 (-) True G242796
TU277694 other upstream 792223 29132316 ~ 29152629 (-) True G243154

Expression Profile