RNA id: TU276869


Basic Information

Item Value
RNA id TU276869
length 507
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G242367
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28604113 ~ 28604619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatggggcccgctctggctagagcaaggcccgcctccaaccctccgaccagtcaagaagaccgaaacgacaagactccacctactttattctatgtataaaaatgtatgtaaccattgtataggcctctttttcacctggctccttgccgagttatgtgaactaggtccgtgcacgtaaaactgcgggacaagatatctctgactcattaaaactgtctttcgttacaactgaaatccactctgtccagcgtccgtgatttggtctcaactctccagtatttgaacactaacagaattggtagcagagtttggttattcttgaattcgatctattataagttagtgtgagaggacgagactgatcacggctaaaaaatcagacggaagagtgacttccccagccattcatcttgcctcaggaaatctgatcggagcgctctatataaaggtgagcagagcccgttatatcgaaatctgcatattgtattatagtctaaaccaaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276904 lncRNA downstream 5609 28598187 ~ 28598504 (-) True G242401
TU276901 lncRNA downstream 8565 28595278 ~ 28595548 (-) True G242398
TU276900 lncRNA downstream 8867 28594992 ~ 28595246 (-) True G242397
TU276876 lncRNA downstream 14227 28546305 ~ 28589886 (-) True G242374
TU276790 lncRNA downstream 89945 28513817 ~ 28514168 (-) True G242291
TU277053 lncRNA upstream 131263 28735882 ~ 28736388 (-) True G242547
TU277093 lncRNA upstream 168494 28773113 ~ 28773350 (-) True G242585
TU277106 lncRNA upstream 176764 28781383 ~ 28783460 (-) False LOC110517244
TU277104 lncRNA upstream 176981 28781600 ~ 28782971 (-) False LOC110517244
TU277107 lncRNA upstream 176981 28781600 ~ 28783460 (-) True LOC110517244
XM_036973742.1 mRNA downstream 250451 28343744 ~ 28353662 (-) True LOC110517198
XM_021595369.2 mRNA downstream 252017 28343744 ~ 28352096 (-) False LOC110517198
XM_021595321.2 mRNA downstream 324036 28275767 ~ 28280077 (-) False LOC110517114
XM_021595258.2 mRNA downstream 816633 27769884 ~ 27787480 (-) True si:ch211-107n13.1
XM_021595239.2 mRNA downstream 921196 27661796 ~ 27682917 (-) True ago1
XR_002472529.2 mRNA upstream 114921 28719540 ~ 28725294 (-) False LOC110517222
LOC110517244 mRNA upstream 176977 28781596 ~ 28786278 (-) False LOC110517244
XM_021595405.2 mRNA upstream 286801 28891420 ~ 28921524 (-) False rspo1
XM_036973744.1 mRNA upstream 286801 28891420 ~ 28921524 (-) True rspo1
XM_021595420.2 mRNA upstream 430309 29034928 ~ 29039438 (-) True dnali1
TU276553 other downstream 324068 28275772 ~ 28280045 (-) True LOC110517114
TU276496 other downstream 347604 28255157 ~ 28256509 (-) False G242021
TU275290 other downstream 1419008 27184660 ~ 27185105 (-) True G240906
TU275055 other downstream 1445449 27155568 ~ 27158664 (-) True LOC110516678
TU274911 other downstream 1491491 27112182 ~ 27112622 (-) True LOC110516667
TU276998 other upstream 114835 28719454 ~ 28725203 (-) True LOC110517222
TU277045 other upstream 122351 28726970 ~ 28730375 (-) True G242539
TU277105 other upstream 176981 28781600 ~ 28786278 (-) False LOC110517244
TU277309 other upstream 341122 28945741 ~ 28946292 (-) True G242796
TU277694 other upstream 527697 29132316 ~ 29152629 (-) True G243154

Expression Profile