RNA id: TU277053


Basic Information

Item Value
RNA id TU277053
length 507
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G242547
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28735882 ~ 28736388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgcgcgttcatGCAAGCAGGAACACATGTTGACTAACCCTCCTTGAGAGAAACGCCAATGTCATCCTCTTCTCTTTCCTGTTGACAAAatggtctatcactctgtcatacagtacacacttttatttttagttgacctaggctacctggctaaaatgcttgctcactagcctaacttccattcatgggcaacaTTACTTAGTTAatattagccttctacatctagctacatattgaacttccatcctctcaggccaggggcacaacaatgtatgaattaatggttggatcagaatcaccgttataatcattggccagtacggagaattaagtaaaaccacaagtccaaatccctatttccatccatggctaatttagtaAGGGACCattttagctagatagctagctagccactggaggaaaacaatacaacaagatgcaacaattcaaatgTTTCTGTCAATGATGTATGCTCTCAATAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276869 lncRNA downstream 131263 28604113 ~ 28604619 (-) True G242367
TU276904 lncRNA downstream 137378 28598187 ~ 28598504 (-) True G242401
TU276901 lncRNA downstream 140334 28595278 ~ 28595548 (-) True G242398
TU276900 lncRNA downstream 140636 28594992 ~ 28595246 (-) True G242397
TU276876 lncRNA downstream 145996 28546305 ~ 28589886 (-) True G242374
TU277093 lncRNA upstream 36725 28773113 ~ 28773350 (-) True G242585
TU277106 lncRNA upstream 44995 28781383 ~ 28783460 (-) False LOC110517244
TU277104 lncRNA upstream 45212 28781600 ~ 28782971 (-) False LOC110517244
TU277107 lncRNA upstream 45212 28781600 ~ 28783460 (-) True LOC110517244
TU277118 lncRNA upstream 58613 28795001 ~ 28796190 (-) True G242607
XR_002472529.2 mRNA downstream 10588 28719540 ~ 28725294 (-) False LOC110517222
XM_036973742.1 mRNA downstream 382220 28343744 ~ 28353662 (-) True LOC110517198
XM_021595369.2 mRNA downstream 383786 28343744 ~ 28352096 (-) False LOC110517198
XM_021595321.2 mRNA downstream 455805 28275767 ~ 28280077 (-) False LOC110517114
XM_021595258.2 mRNA downstream 948402 27769884 ~ 27787480 (-) True si:ch211-107n13.1
LOC110517244 mRNA upstream 45208 28781596 ~ 28786278 (-) False LOC110517244
XM_021595405.2 mRNA upstream 155032 28891420 ~ 28921524 (-) False rspo1
XM_036973744.1 mRNA upstream 155032 28891420 ~ 28921524 (-) True rspo1
XM_021595420.2 mRNA upstream 298540 29034928 ~ 29039438 (-) True dnali1
XM_021595453.2 mRNA upstream 459758 29196146 ~ 29201564 (-) True LOC110517348
TU277045 other downstream 5507 28726970 ~ 28730375 (-) True G242539
TU276998 other downstream 10679 28719454 ~ 28725203 (-) True LOC110517222
TU276553 other downstream 455837 28275772 ~ 28280045 (-) True LOC110517114
TU276496 other downstream 479373 28255157 ~ 28256509 (-) False G242021
TU275290 other downstream 1550777 27184660 ~ 27185105 (-) True G240906
TU277105 other upstream 45212 28781600 ~ 28786278 (-) False LOC110517244
TU277309 other upstream 209353 28945741 ~ 28946292 (-) True G242796
TU277694 other upstream 395928 29132316 ~ 29152629 (-) True G243154
TU278065 other upstream 720093 29456481 ~ 29458046 (-) True LOC110517486
TU278954 other upstream 1352455 30088843 ~ 30129214 (-) True G244338

Expression Profile