RNA id: TU277309


Basic Information

Item Value
RNA id TU277309
length 552
RNA type TUCP
GC content 0.64
exon number 1
gene id G242796
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28945741 ~ 28946292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcatagcccggtgcggtatattccagctccgcgtgtcggccgggctagattgagcgtcgagcctaatgccatgaagccggctctacgcagctggtccccagtgcgtctccttgggccggcttacatggcaccagccttgcgctcggtgtctccggttcgcctgcatagcccagtgcgggctattccacctcgccgcactggcagggcgaccgtgagcattcaaccaggtaaggttgggcaggctcggtgctcaagagctccagtgcgcctgcacggtccggtctacccagtaccacctcctCACCCcggccctccggtagcagctccccgcaccaggcttcctgtgcgtgtcctcggcccagtaccaccagtgccagcaccacgcatcaggcctatagtgcgcctcgcctgtccagcgctgtcggagccctcctctccagcgctgtcggagtctcccgcctgtttagcgctgttagagccttccttctctacagcgctgccggagtctcccgcctgttcagaactgccagttagcatagagctgccagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277306 lncRNA downstream 3058 28942438 ~ 28942683 (-) True G242793
TU277297 lncRNA downstream 7078 28938332 ~ 28938663 (-) True G242784
TU277270 lncRNA downstream 22584 28922937 ~ 28923157 (-) True G242757
TU277269 lncRNA downstream 23235 28922303 ~ 28922506 (-) True G242756
TU277260 lncRNA downstream 33602 28911920 ~ 28912139 (-) True G242747
TU277310 lncRNA upstream 517 28946809 ~ 28947009 (-) True G242797
TU277318 lncRNA upstream 5244 28951536 ~ 28951753 (-) True G242805
TU277340 lncRNA upstream 21302 28967594 ~ 28967861 (-) True G242827
TU277671 lncRNA upstream 143190 29089482 ~ 29089979 (-) True G243132
TU277676 lncRNA upstream 157558 29103850 ~ 29104095 (-) True G243137
XM_021595405.2 mRNA downstream 24217 28891420 ~ 28921524 (-) False rspo1
XM_036973744.1 mRNA downstream 24217 28891420 ~ 28921524 (-) True rspo1
LOC110517244 mRNA downstream 159463 28781596 ~ 28786278 (-) False LOC110517244
XR_002472529.2 mRNA downstream 220447 28719540 ~ 28725294 (-) False LOC110517222
XM_036973742.1 mRNA downstream 592079 28343744 ~ 28353662 (-) True LOC110517198
XM_021595420.2 mRNA upstream 88636 29034928 ~ 29039438 (-) True dnali1
XM_021595453.2 mRNA upstream 249854 29196146 ~ 29201564 (-) True LOC110517348
XM_021595506.2 mRNA upstream 375739 29322031 ~ 29338651 (-) False LOC110517416
XM_021595493.2 mRNA upstream 375739 29322031 ~ 29338655 (-) False LOC110517416
XM_021595500.2 mRNA upstream 375739 29322031 ~ 29350168 (-) False LOC110517416
TU277105 other downstream 159463 28781600 ~ 28786278 (-) False LOC110517244
TU277045 other downstream 215366 28726970 ~ 28730375 (-) True G242539
TU276998 other downstream 220538 28719454 ~ 28725203 (-) True LOC110517222
TU276553 other downstream 665696 28275772 ~ 28280045 (-) True LOC110517114
TU276496 other downstream 689232 28255157 ~ 28256509 (-) False G242021
TU277694 other upstream 186024 29132316 ~ 29152629 (-) True G243154
TU278065 other upstream 510189 29456481 ~ 29458046 (-) True LOC110517486
TU278954 other upstream 1142551 30088843 ~ 30129214 (-) True G244338
TU278995 other upstream 1227721 30174013 ~ 30177408 (-) True G244379
TU278997 other upstream 1252940 30199232 ~ 30199770 (-) True G244381

Expression Profile