RNA id: TU278516



Basic Information


Item Value
RNA id TU278516
length 212
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G243928
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29746781 ~ 29748615 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCCAATATATACCTCCAAATACCGGATTctcaggcattatcacttaagtgTGAGGAgaaagttatgtccagtTCAACTGTCTGAAATGTTCAAGATGTTCAGATGAAGTTATATCAAAATCACAATCTGAGAATTATGGCCATTGGATATTATCAGTGAGATATACATTATAACAAACGTTACTGCCATCGAAAATGTAGTAAACATATAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU278252 lncRNA downstream 79882 29666663 ~ 29666899 (-) True G243678
TU278139 lncRNA downstream 218155 29528391 ~ 29528626 (-) True G243568
TU278068 lncRNA downstream 333797 29412197 ~ 29412984 (-) True stk40
TU277878 lncRNA downstream 355938 29390588 ~ 29390843 (-) True G243330
TU277870 lncRNA downstream 360086 29381626 ~ 29386695 (-) True G243322
TU278662 lncRNA upstream 199318 29947933 ~ 29948274 (-) True G244069
TU278684 lncRNA upstream 223137 29971752 ~ 29972079 (-) True G244091
TU278744 lncRNA upstream 263851 30012466 ~ 30012683 (-) True G244151
TU278749 lncRNA upstream 266263 30014878 ~ 30015090 (-) True G244156
TU278750 lncRNA upstream 266602 30015217 ~ 30015427 (-) True G244157
XM_021595537.2 mRNA downstream 249901 29495265 ~ 29496880 (-) True LOC110517512
XM_021581429.2 mRNA downstream 259303 29476499 ~ 29487478 (-) True csf3r
XM_021581433.2 mRNA downstream 259342 29476499 ~ 29487439 (-) False csf3r
NM_001124402.1 mRNA downstream 259359 29476326 ~ 29487422 (-) False csf3r
XM_021581424.2 mRNA downstream 263034 29476256 ~ 29483747 (-) False csf3r
XM_021595539.2 mRNA upstream 30460 29779075 ~ 29901161 (-) True LOC110517528
XM_021595555.2 mRNA upstream 380638 30129253 ~ 30138701 (-) False LOC110517552
XM_021595551.2 mRNA upstream 380638 30129253 ~ 30138702 (-) False LOC110517552
XM_036973792.1 mRNA upstream 380638 30129253 ~ 30138703 (-) True LOC110517552
XM_021595595.2 mRNA upstream 474646 30223261 ~ 30249900 (-) True LOC110517624
TU278065 other downstream 288735 29456481 ~ 29458046 (-) True LOC110517486
TU277694 other downstream 594152 29132316 ~ 29152629 (-) True G243154
TU277309 other downstream 800489 28945741 ~ 28946292 (-) True G242796
TU277105 other downstream 960503 28781600 ~ 28786278 (-) False LOC110517244
TU277045 other downstream 1016406 28726970 ~ 28730375 (-) True G242539
TU278954 other upstream 340228 30088843 ~ 30129214 (-) True G244338
TU278995 other upstream 425398 30174013 ~ 30177408 (-) True G244379
TU278997 other upstream 450617 30199232 ~ 30199770 (-) True G244381
TU279011 other upstream 462955 30211570 ~ 30217589 (-) False G244393
TU279014 other upstream 462955 30211570 ~ 30217112 (-) False G244393

Expression Profile


TU278516 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

TU278516 Expression in each Bioproject

Bar chart with 1 bar.
TU278516 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.