RNA id: TU280046


Basic Information

Item Value
RNA id TU280046
length 902
lncRNA type inter_gene
GC content 0.31
exon number 5
gene id G245316
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30819525 ~ 30822509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTAGTTCCCTTACATTCATAACTGTcactagtgttagtttccttacatttataactgtcactagtgttagtttccttacatttataactgtcactagtgttagtttccttacatttataactgtcactagtgttagttgccttacatttataactgtctctttagtgttagttcccttacatttataactgtctctttagtgttagtatccttacatttataactgtcacataagtgttagtatccttacatttataactgtcactttagtgttagtttccttccatttataactgtctctttagtgttagttcccttacatttataactgtctctttagtgttagtatccttacatttataactgtctctttagtgttagtatccttacatttataactgtctctttagtgttagttcccttacatttataactgttcCAAGTGTtcgtttccttacatttataactgtctctttagtgttagtatccttacatttataactgtctctttagtgttagttcccttacatttataactgtctctttagtgttagttcccttacatttataactgtctctttagtgttagttccCTTACATTTATAAGTGTTCCAAGTGTTcatttccttacatttataactgtcactagtgTTAGTTGCCTTACATTTACAactgtcactagtgttagttgccttacatttataactgtcactagtgttagtttccttacatttataactgtcactagtgttagtttccttacatttataactgtcactagtgTTAGTTGCCTTACATTTacaactgtcactttagtgttagtatccttacatttataactgtctctttagtgttagtatccttacatttataactgtctctttagtgttagtatcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279983 lncRNA downstream 7992 30807814 ~ 30811533 (-) True LOC110518094
TU280035 lncRNA downstream 38560 30778191 ~ 30780965 (-) True G245308
TU280005 lncRNA downstream 107245 30712044 ~ 30712280 (-) True G245279
TU280004 lncRNA downstream 108127 30711154 ~ 30711398 (-) True G245278
TU279890 lncRNA downstream 152015 30665203 ~ 30667510 (-) False G245188
TU279973 lncRNA upstream 12564 30835073 ~ 30838562 (-) True G245249
TU280079 lncRNA upstream 72466 30894975 ~ 30897112 (-) True G245347
TU280089 lncRNA upstream 77668 30900177 ~ 30902960 (-) True G245349
TU280093 lncRNA upstream 80923 30903432 ~ 30906992 (-) True G245350
TU280097 lncRNA upstream 91590 30914099 ~ 30914409 (-) True G245354
XR_005042959.1 mRNA downstream 1423 30813299 ~ 30818102 (-) True LOC118951441
XM_021595838.2 mRNA downstream 8243 30800297 ~ 30811282 (-) False LOC110518094
XM_021595796.2 mRNA downstream 94119 30713906 ~ 30725406 (-) True p3h3
XM_021595782.2 mRNA downstream 109329 30697807 ~ 30710196 (-) True gnb3a
XM_021595792.2 mRNA downstream 109331 30697807 ~ 30710194 (-) False gnb3a
XM_021595858.2 mRNA upstream 38505 30861014 ~ 30877397 (-) False LOC110518140
XM_036973814.1 mRNA upstream 38505 30861014 ~ 30880195 (-) False LOC110518140
XM_036973813.1 mRNA upstream 38516 30861025 ~ 30881485 (-) False LOC110518140
XM_021595854.2 mRNA upstream 38516 30861025 ~ 30881486 (-) True LOC110518140
XM_021595877.2 mRNA upstream 59159 30881668 ~ 30883557 (-) False LOC110518189
TU279011 other downstream 601936 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 602413 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 619755 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 642117 30174013 ~ 30177408 (-) True G244379
TU278954 other downstream 690311 30088843 ~ 30129214 (-) True G244338
TU280109 other upstream 122444 30944953 ~ 30945843 (-) True G245366
TU280776 other upstream 740036 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2596920 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3534766 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 4066997 34889506 ~ 34889954 (-) True G249978

Expression Profile