RNA id: TU280089


Basic Information

Item Value
RNA id TU280089
length 2118
lncRNA type read_through
GC content 0.41
exon number 2
gene id G245349
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30900177 ~ 30902960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGTCACTAGAGCGCAGTAGTGATGCCTCAGAAAACAATTATCTTTGATGAGAATATTTACTCACCCATTGTTGCTCAAAATGATGGTGGTGACATTTTTCAGTTCTTGAAACGTCTCTGATCCAATTCTGAATATATTATTTCCTGTGATGATCACATTCCTTGTGTATCCTGGAATATCTTGTGGTATGGCGCGAAGGTCCTTGGAGACGCATTTCACTGTGCGCGTGTCAGCAAAGCATCGGCAGCCTGATGGGCATTCCAAGCACTGGTGGAGCGCACAGAGTAGCGCACCAAAAAGTACAATAATCACCAAATTATGCATAACTCAACAGAAAAGTTATAAACTGATAAATACCAGAATATGCAGAAGGTGATGGTGAGTCATATTACGCCCTATCATGCACAAAAAAACTCAGATTCCGGTATGAGGTGTTAGTTAGCCTTTCTTTAGATGGTGCCGCATGATAGCCCAATGGTTTGTGTCTGCATTGAGTGAGAGGGATGTTTCATCTGCTGATCAACAGGACCGGCGAATTGTTAGCTAGAGTTTAAATACCGGCGCAGAATCAAGGAGAGAACAGTGAACAGTGAACGTCTTTTAAAGGCACAGGCGCTAATAATATTATACTACACAGAAGTCGACCTCTGTGGTGTCTTTGTGTGATATGATTTAACAGTTTATAAACAATGAACAAGCCGTCTATGCATAATATGTACATTTATTTATATTtgttccaataaataacacataaTTTGGGCGGTGCATATATTTGTCCTGCTACACACAAGTGTGTTTGTTTTTCACCTTGTGGATCCGGTATTCGaaacccaacgctctaacctcgaGGCTACGTGCCGCCCTCAATAACAGGCAGTTAAAGACCCCAgccatccaagtcatagactgttctctctgctaccataaGGCAAGCGGTAGGACCGCTGCAttaagtctggaaccaacaggaccctgaacagcttctgcccccaagccataagactgtttaATAGTTTAgctaaatagtctgggtagttatttggttaactatctgcattgaccctttttgcctcatcacatatgctgctacaactgtttattatctagcctgttgcctagtcactttattcctagttatatgtacatatctacctcaattacctcgtacccctgcacatcgactctgtactgctACCCCATGTATATATAGAAAGGTTAGCGTtactgtgtatttattattacctTTCTATTATGTATATATTTGATTTTTCTCTGCATTGAtgggaagcatttcactgttagtctacacctgttgtttacgaagcatgacaaatacaatttgttttAACTTTACTAGCCTATATGGTATAGCCTATTGCCCATAATTACTGTAATTCTATCAAATGCTTGGTCATGATTATgtactactgtacagtatattaacatTCCTGAGCATGTTGCTTCAGAGAACTTACAGTATTGCATGAACAAATACTGTCTGATAAAATACAGTAAACAATTACAAAGTAAAATGATGTTGAGCTGTTATTATACTGGTTAAATGGGGTTCAGTAAGAGACCAGTATGAATTTATGACCATAGACGATATATTTCCGTTCCAATtattgtcatttagcagacgctataTCAGTTCTATATTTATGGTTATGACTATCCCAAGCCAAACATTCATTTATACGACATTCCTTTCTGTTATCGAGTAAAAGGTACTTCAAAACAAGCCAGAACAGCTGGCCATAACTGCCCTCATGAGACACCTTTCTGATGGATGTCGGAGAGTGTGGATATTAGTACTGCACAAAGAAGTGTCCCATCGGAACATTCCTCTTCTTCATTCACTTTCATGATTACAACTGAGCAGGAAAATCCCTTGTattatctctcccctcctccatcgcCCCCTCCCTTGTGTGGTCAGTGCAGGTTGAGTGTTAGGATGAAGGTGACGAGGGCTCCAGTCAGCATGAGGAAGGGCAGCCAGGTCTTGAGGAATGACACACAGTTTATGGCGGGAAAAATGCTTGAGGGTCGCCTTTGCCTTTTGTAGGGCAGTATACAGGGACAGGTAAGGATGTGCAGTCAGTTCAATTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280079 lncRNA downstream 3065 30894975 ~ 30897112 (-) True G245347
TU279973 lncRNA downstream 61615 30835073 ~ 30838562 (-) True G245249
TU280046 lncRNA downstream 77668 30819525 ~ 30822509 (-) True G245316
TU279983 lncRNA downstream 88644 30807814 ~ 30811533 (-) True LOC110518094
TU280035 lncRNA downstream 119212 30778191 ~ 30780965 (-) True G245308
TU280093 lncRNA upstream 472 30903432 ~ 30906992 (-) True G245350
TU280097 lncRNA upstream 11139 30914099 ~ 30914409 (-) True G245354
TU280102 lncRNA upstream 22115 30925075 ~ 30925313 (-) True G245359
TU280106 lncRNA upstream 25276 30928236 ~ 30928632 (-) True G245363
TU280107 lncRNA upstream 31645 30934605 ~ 30934858 (-) True G245364
XM_021595883.2 mRNA downstream 16619 30881668 ~ 30883558 (-) True LOC110518189
XM_021595877.2 mRNA downstream 16620 30881668 ~ 30883557 (-) False LOC110518189
XM_021595881.2 mRNA downstream 16620 30881668 ~ 30883557 (-) False LOC110518189
XM_021595854.2 mRNA downstream 18691 30861025 ~ 30881486 (-) True LOC110518140
XM_036973813.1 mRNA downstream 18692 30861025 ~ 30881485 (-) False LOC110518140
XM_021595923.2 mRNA upstream 27701 30930661 ~ 30933160 (-) True LOC110518255
XM_021595958.2 mRNA upstream 255466 31158426 ~ 31163476 (-) True LOC110518336
XM_036973837.1 mRNA upstream 463562 31366522 ~ 31418893 (-) False LOC110518297
XM_036973838.1 mRNA upstream 466320 31369280 ~ 31418894 (-) True LOC110518297
XM_036973841.1 mRNA upstream 659424 31562384 ~ 31581203 (-) False LOC110518371
TU279011 other downstream 682588 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 683065 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 700407 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 722769 30174013 ~ 30177408 (-) True G244379
TU278954 other downstream 770963 30088843 ~ 30129214 (-) True G244338
TU280109 other upstream 41993 30944953 ~ 30945843 (-) True G245366
TU280776 other upstream 659585 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2516469 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3454315 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3986546 34889506 ~ 34889954 (-) True G249978

Expression Profile