RNA id: TU280093


Basic Information

Item Value
RNA id TU280093
length 2113
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G245350
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30903432 ~ 30906992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTTACAATTGTTTCATTTAAATTATCTTACTTAACACGGGTAAATTATGCACATGAGTTTATACACCACACGAGATCCTGCTTCATCACTTCAATACCATGTCACTTCTGCACTCTGGAAATATGTGCCCTTTCTTTCTTGCCCTGTCACGTCTGTTTACAAAGTCAGTTAATGACGAAAAGATGACTTAGTGCAGTGTGGAATCATTCAATCTTCCCAAAAGAGTAGACATTCAAGGTTAGTTTTGCAGTCAAGACCCTTCAGATAGGCAATATTGCTTTGTTTCCATCTAGATATGTCAATAAGACCCACAAAGTAttataaaataatacatacaacaccAAAGACAGATGGCAACTTGGTTCAATCTATGCAAGTCAGTAAAAATGTGGCCACAGTAAAAGAGGTATCAAGGCTATGCAGGTACAACGAGCCCGGCAGTTCACACTTAAAATAGGCTCTCCATTAAATAGCATAACTGTTCTGCAGTTTTATGCTTACATTAGTGATGTAATTATATTCAACACATTGTACAGAAATGCATGATACAGATAAGTCCCTCACAAATGTGAGCAGGGTTGGGCAGAAACTGATTATATGACatctgattttttttaaatgtacttgtaaTCAGTTATGTTACCAGCAaacaaatattgtaatcagattacagaaaaaaaactagatgattaattCTTGGATTACTTtcaaattcagaaaggatgttttctgttttctcaattacATTTAATTCAGCATTGATAAAAGCACaggtttaagtttgttccacctgagcgagtgtgaccacaagtcagagaccacgtGTGTGTTGATCCTTTTTTGACTACTTCTaataaggggaaagtaatccgaTTACATtagagtttgggtaatccaaaagttacatgactgattacaattttggacaggtaactaaactgtaacagattacctttagaaagtaacctacccaaccctgaatGCAAGTTCACTCCAGTCCAGTTCCATTCCAGGGAATGTGGAATCACAAATCCACCGAGATGGAGCCTGGCTTGACCTGTGTGTCTGAGGAGATCTGAACTAAACAGGTGTCAGTGGGTAGCTGTGATAAGCGGTTATCTGAGTGAGCTTGTCCAAAACTACCGTTTGTCGGTGGCTTGTCTTCGACTCTGACGTCTTTTGAGAGGTATTCCCGGCGTGGGTCAGTGTCGATCTCATAGCGGTGTTGATACCCCTCCAACACGTCATGGCAGGCATCTCGCGTCTCCACCACCCACTTTTTAATACCTTGCCGGTTGAGGTAGAGCACAAAGAGGAAGACCATGCCCACAAAGCCCAGCACCAGACCCAGGAGGACATAGGAGGTCTGCAGGGAGAGGTTGTCCACCTCGTCTCTGATTCCGACCAGAGGTGGTGAAGTGGCATGGCATCCGACAACTTGGACCCCGAGCGCCCGCAGGGGCCTGTTCTGAAACTCCCATGGTGAGGCGCAGGTCAGGGCTTCTGCATCCCCCACCTGAGCCCGGGAGCTCTTGAGCCACACGGCAAAGTCTTGGATCTCACATGTGCAGACATAGGGGTTGTGGCTCAGCAGGATGCGGGGGGCTTGCACCAGCCTCTCCAGCTCCCCCAGAGCATCGCTTCCGAACACCCTGAAAGAGTTGCGGGTCAGGTCGAGCAGCTCCAGGCGGCGCAGGCCAAAGAAGGTGCCGTTGTAGACTGATGCTAGGGAGTTGTTACCCAGGAGGAGGTGCTGCAGGCTGGGGAGGTGGGAGAACATCCCTGGGGGTAGGAAGACCAGGCAGTTCCCAGAGAGGTCTAGGCTGAGCAGCCCTCCTAGGCCTCCCCAGCGCAGTGCGGTGGTGAGATCAGTCAGTGAGGTGTAGTTATACAGGGAGCGGTTGAGGTTGAGCTCCTTTAGAGGACTCCCTGGGATGTTGAGTGCTTCAGGGTGGATGAGAGCGAGATGGTTGCAGCTCATGTCCAGGTAGCGCAGGTAAGAAAGGGTAGAGAAGCTGTGGGACGCAACCTCTGTGATCCTGGGAAGACAGATGGTCCATGTTTACAGTCCCCAAACCGATTATTGGACTTAGAAGTAATGTTTGCGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280089 lncRNA downstream 472 30900177 ~ 30902960 (-) True G245349
TU280079 lncRNA downstream 6320 30894975 ~ 30897112 (-) True G245347
TU279973 lncRNA downstream 64870 30835073 ~ 30838562 (-) True G245249
TU280046 lncRNA downstream 80923 30819525 ~ 30822509 (-) True G245316
TU279983 lncRNA downstream 91899 30807814 ~ 30811533 (-) True LOC110518094
TU280097 lncRNA upstream 7107 30914099 ~ 30914409 (-) True G245354
TU280102 lncRNA upstream 18083 30925075 ~ 30925313 (-) True G245359
TU280106 lncRNA upstream 21244 30928236 ~ 30928632 (-) True G245363
TU280107 lncRNA upstream 27613 30934605 ~ 30934858 (-) True G245364
TU280064 lncRNA upstream 30344 30937336 ~ 30937499 (-) True G245333
XM_021595883.2 mRNA downstream 19874 30881668 ~ 30883558 (-) True LOC110518189
XM_021595877.2 mRNA downstream 19875 30881668 ~ 30883557 (-) False LOC110518189
XM_021595881.2 mRNA downstream 19875 30881668 ~ 30883557 (-) False LOC110518189
XM_021595854.2 mRNA downstream 21946 30861025 ~ 30881486 (-) True LOC110518140
XM_036973813.1 mRNA downstream 21947 30861025 ~ 30881485 (-) False LOC110518140
XM_021595923.2 mRNA upstream 23669 30930661 ~ 30933160 (-) True LOC110518255
XM_021595958.2 mRNA upstream 251434 31158426 ~ 31163476 (-) True LOC110518336
XM_036973837.1 mRNA upstream 459530 31366522 ~ 31418893 (-) False LOC110518297
XM_036973838.1 mRNA upstream 462288 31369280 ~ 31418894 (-) True LOC110518297
XM_036973841.1 mRNA upstream 655392 31562384 ~ 31581203 (-) False LOC110518371
TU279011 other downstream 685843 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 686320 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 703662 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 726024 30174013 ~ 30177408 (-) True G244379
TU278954 other downstream 774218 30088843 ~ 30129214 (-) True G244338
TU280109 other upstream 37961 30944953 ~ 30945843 (-) True G245366
TU280776 other upstream 655553 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2512437 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3450283 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3982514 34889506 ~ 34889954 (-) True G249978

Expression Profile