RNA id: TU280097



Basic Information


Item Value
RNA id TU280097
length 311
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G245354
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30914099 ~ 30914409 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCCTCTAGTGCATTGCAAAGTGAGAGGTTAAAGGAGAGATCAGGATGCACTTCCTGATTatagaaaaaataagcaaacacgtttggtgtttgccaaaaggcatgtgggagactcaccaaacatatggaagaaggtactctggtcagatgagactaaaattgagcttttgggGAATCAAGGAAAATACTATGTCTGGCATAAACACaaaacctctcatcaccccgagaacaccatgtttttcatcggcagggactgggaaactggtcagaattgaaggaatgatggatggcgctaaatacagggaaagtct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU280093 lncRNA downstream 7107 30903432 ~ 30906992 (-) True G245350
TU280089 lncRNA downstream 11139 30900177 ~ 30902960 (-) True G245349
TU280079 lncRNA downstream 16987 30894975 ~ 30897112 (-) True G245347
TU279973 lncRNA downstream 75537 30835073 ~ 30838562 (-) True G245249
TU280046 lncRNA downstream 91590 30819525 ~ 30822509 (-) True G245316
TU280102 lncRNA upstream 10666 30925075 ~ 30925313 (-) True G245359
TU280106 lncRNA upstream 13827 30928236 ~ 30928632 (-) True G245363
TU280107 lncRNA upstream 20196 30934605 ~ 30934858 (-) True G245364
TU280064 lncRNA upstream 22927 30937336 ~ 30937499 (-) True G245333
TU280062 lncRNA upstream 24481 30938890 ~ 30939206 (-) True G245331
XM_021595883.2 mRNA downstream 30541 30881668 ~ 30883558 (-) True LOC110518189
XM_021595877.2 mRNA downstream 30542 30881668 ~ 30883557 (-) False LOC110518189
XM_021595881.2 mRNA downstream 30542 30881668 ~ 30883557 (-) False LOC110518189
XM_021595854.2 mRNA downstream 32613 30861025 ~ 30881486 (-) True LOC110518140
XM_036973813.1 mRNA downstream 32614 30861025 ~ 30881485 (-) False LOC110518140
XM_021595923.2 mRNA upstream 16252 30930661 ~ 30933160 (-) True LOC110518255
XM_021595958.2 mRNA upstream 244017 31158426 ~ 31163476 (-) True LOC110518336
XM_036973837.1 mRNA upstream 452113 31366522 ~ 31418893 (-) False LOC110518297
XM_036973838.1 mRNA upstream 454871 31369280 ~ 31418894 (-) True LOC110518297
XM_036973841.1 mRNA upstream 647975 31562384 ~ 31581203 (-) False LOC110518371
TU279011 other downstream 696510 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 696987 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 714329 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 736691 30174013 ~ 30177408 (-) True G244379
TU278954 other downstream 784885 30088843 ~ 30129214 (-) True G244338
TU280109 other upstream 30544 30944953 ~ 30945843 (-) True G245366
TU280776 other upstream 648136 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2505020 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3442866 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3975097 34889506 ~ 34889954 (-) True G249978

Expression Profile