RNA id: TU280139


Basic Information

Item Value
RNA id TU280139
length 259
lncRNA type intronic
GC content 0.38
exon number 1
gene id G245396
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30989939 ~ 30990197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTTAGGTAGAACTTTTAAGAAAACAGTACAGTATCATCACACCACTTCAAATAGCTCCTCCTCTGAAAACATCAAAGCCCAAGAAGCTGTCAAGAGCCCAAATTATTCTATTTCAAATTGAACAGAAAATTGTTTCCTACTTTCCAAAAAGTACTGATTCGAAGCAATCTCTGAAACTTCTGGAAAATAATTCTCCCCCCAGTTCGGGAATactaaaaagagagaaagagagggagaaaaagaacgGGGTGCAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280136 lncRNA downstream 1506 30988161 ~ 30988433 (-) True G245393
TU280134 lncRNA downstream 4063 30985657 ~ 30985876 (-) True G245391
TU280129 lncRNA downstream 10681 30979018 ~ 30979258 (-) True G245386
TU280127 lncRNA downstream 12961 30976760 ~ 30976978 (-) True G245384
TU280122 lncRNA downstream 20119 30969570 ~ 30969820 (-) True G245379
TU280140 lncRNA upstream 179 30990376 ~ 30990660 (-) True G245397
TU280141 lncRNA upstream 665 30990862 ~ 30991368 (-) True G245398
TU280144 lncRNA upstream 3372 30993569 ~ 30994047 (-) True G245401
TU280150 lncRNA upstream 12151 31002348 ~ 31002574 (-) True G245407
TU280151 lncRNA upstream 13944 31004141 ~ 31004372 (-) True G245408
XM_021595923.2 mRNA downstream 56779 30930661 ~ 30933160 (-) True LOC110518255
XM_021595883.2 mRNA downstream 106381 30881668 ~ 30883558 (-) True LOC110518189
XM_021595877.2 mRNA downstream 106382 30881668 ~ 30883557 (-) False LOC110518189
XM_021595881.2 mRNA downstream 106382 30881668 ~ 30883557 (-) False LOC110518189
XM_021595854.2 mRNA downstream 108453 30861025 ~ 30881486 (-) True LOC110518140
XM_021595958.2 mRNA upstream 168229 31158426 ~ 31163476 (-) True LOC110518336
XM_036973837.1 mRNA upstream 376325 31366522 ~ 31418893 (-) False LOC110518297
XM_036973838.1 mRNA upstream 379083 31369280 ~ 31418894 (-) True LOC110518297
XM_036973841.1 mRNA upstream 572187 31562384 ~ 31581203 (-) False LOC110518371
XM_036973842.1 mRNA upstream 572187 31562384 ~ 31581203 (-) False LOC110518371
TU280109 other downstream 44096 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 772350 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 772827 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 790169 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 812531 30174013 ~ 30177408 (-) True G244379
TU280776 other upstream 572348 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2429232 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3367078 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3899309 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 3905761 34895958 ~ 34896296 (-) True G249990

Expression Profile