RNA id: TU280141


Basic Information

Item Value
RNA id TU280141
length 507
lncRNA type intronic
GC content 0.49
exon number 1
gene id G245398
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30990862 ~ 30991368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCAGCATCTACTATATTATGGTCAAAGTTCATACAGTATGTCTTGAGCAAGAAGCACCCAAGTGCCAGTCCCGTGTGGCATCACAGCATGTCAACCCCCCCACCCGGTCtcggatccctctggaactttcatcgcgcacacctggcccctattcccactgattgcaTTTGTATATttgtgccctttgttcaccatggtgGGGTCCattattgttccaatgtccgttggtgcgtgtgagtacctgtgctgtgtgtgttggctttcgtgcccttgtggattgccaGATGATTACGTGTCTCGTCCCgcgtgttaatcattgtgcgcgtgtgtatttattcgaggtactcctcgctcttttgtttgggtttcaaccctgtttTTCCGAtgcgtgtttgtttggtcttcgtccacgtgcctttacacggcatgCTGTCATTTGGGgcgtaataaaaaaaaatattacgcattcctgcgcctgtctcccgaatcattgTTACCAACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280140 lncRNA downstream 202 30990376 ~ 30990660 (-) True G245397
TU280139 lncRNA downstream 665 30989939 ~ 30990197 (-) True G245396
TU280136 lncRNA downstream 2429 30988161 ~ 30988433 (-) True G245393
TU280134 lncRNA downstream 4986 30985657 ~ 30985876 (-) True G245391
TU280129 lncRNA downstream 11604 30979018 ~ 30979258 (-) True G245386
TU280144 lncRNA upstream 2201 30993569 ~ 30994047 (-) True G245401
TU280150 lncRNA upstream 10980 31002348 ~ 31002574 (-) True G245407
TU280151 lncRNA upstream 12773 31004141 ~ 31004372 (-) True G245408
TU280164 lncRNA upstream 34797 31026165 ~ 31026409 (-) True G245421
TU280165 lncRNA upstream 35363 31026731 ~ 31026946 (-) True G245422
XM_021595923.2 mRNA downstream 57702 30930661 ~ 30933160 (-) True LOC110518255
XM_021595883.2 mRNA downstream 107304 30881668 ~ 30883558 (-) True LOC110518189
XM_021595877.2 mRNA downstream 107305 30881668 ~ 30883557 (-) False LOC110518189
XM_021595881.2 mRNA downstream 107305 30881668 ~ 30883557 (-) False LOC110518189
XM_021595854.2 mRNA downstream 109376 30861025 ~ 30881486 (-) True LOC110518140
XM_021595958.2 mRNA upstream 167058 31158426 ~ 31163476 (-) True LOC110518336
XM_036973837.1 mRNA upstream 375154 31366522 ~ 31418893 (-) False LOC110518297
XM_036973838.1 mRNA upstream 377912 31369280 ~ 31418894 (-) True LOC110518297
XM_036973841.1 mRNA upstream 571016 31562384 ~ 31581203 (-) False LOC110518371
XM_036973842.1 mRNA upstream 571016 31562384 ~ 31581203 (-) False LOC110518371
TU280109 other downstream 45019 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 773273 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 773750 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 791092 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 813454 30174013 ~ 30177408 (-) True G244379
TU280776 other upstream 571177 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2428061 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3365907 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3898138 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 3904590 34895958 ~ 34896296 (-) True G249990

Expression Profile