RNA id: TU280197



Basic Information


Item Value
RNA id TU280197
length 247
lncRNA type intronic
GC content 0.37
exon number 2
gene id G245454
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31090655 ~ 31090932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcctaacctcctgcccaatgtatgaccatattagagagacatatttccctcagattacacagatccacaaagaattctaaaacaaatccaattttgaaaaactcccatcacagcagcaagatttgtgacctgttgccacgagaaaagggcaaccagtgaagaacacacaccattgtaaatacaacccatatttatgcttatttattttagcttgtgtcctttaaccatttgtacattgttaaaacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU280195 lncRNA downstream 7442 31082908 ~ 31083213 (-) True G245452
TU280194 lncRNA downstream 7958 31082455 ~ 31082697 (-) True G245451
TU280191 lncRNA downstream 10429 31080010 ~ 31080226 (-) True G245448
TU280189 lncRNA downstream 11128 31079311 ~ 31079527 (-) True G245446
TU280188 lncRNA downstream 13032 31077331 ~ 31077623 (-) True G245445
TU280198 lncRNA upstream 138 31091070 ~ 31091369 (-) True G245455
TU280203 lncRNA upstream 9377 31100309 ~ 31100621 (-) True G245460
TU280212 lncRNA upstream 33988 31124920 ~ 31126032 (-) False G245468
TU280211 lncRNA upstream 34450 31125382 ~ 31126231 (-) True G245468
TU280225 lncRNA upstream 36228 31127160 ~ 31127395 (-) True G245481
XM_021595923.2 mRNA downstream 157495 30930661 ~ 30933160 (-) True LOC110518255
XM_021595883.2 mRNA downstream 207097 30881668 ~ 30883558 (-) True LOC110518189
XM_021595877.2 mRNA downstream 207098 30881668 ~ 30883557 (-) False LOC110518189
XM_021595881.2 mRNA downstream 207098 30881668 ~ 30883557 (-) False LOC110518189
XM_021595854.2 mRNA downstream 209169 30861025 ~ 30881486 (-) True LOC110518140
XM_021595958.2 mRNA upstream 67494 31158426 ~ 31163476 (-) True LOC110518336
XM_036973837.1 mRNA upstream 275590 31366522 ~ 31418893 (-) False LOC110518297
XM_036973838.1 mRNA upstream 278348 31369280 ~ 31418894 (-) True LOC110518297
XM_036973841.1 mRNA upstream 471452 31562384 ~ 31581203 (-) False LOC110518371
XM_036973842.1 mRNA upstream 471452 31562384 ~ 31581203 (-) False LOC110518371
TU280109 other downstream 144812 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 873066 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 873543 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 890885 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 913247 30174013 ~ 30177408 (-) True G244379
TU280776 other upstream 471613 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2328497 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3266343 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3798574 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 3805026 34895958 ~ 34896296 (-) True G249990

Expression Profile