RNA id: TU280211



Basic Information


Item Value
RNA id TU280211
length 850
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G245468
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31124920 ~ 31126231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTATTATTCTCCAACTTTCAACAAAAACAAATCGCGCAACTTAAAGATTGTACGTCTTTCTAGATAACGGGAACATTTCCCGTTATGtaatcttaaaagtattatttttgCAACTGAAAATAGCCTATGTATTTCCAGTCATGACTCCAAAAACAAGTGGTAATTCTGGTGTTGGTCATAAAATAATGCAAATGTTAAATAATGTTAGCACCAAAGACTTTGCACCTCACTAGAACTCTATAGATGTGAATGTTATCCTGAGTTGATCGTTGCAAAACGGAGATAAagctatgtaaaaaaaaaatacatgacaTTTTCAATGAAAGAGACAAAGAGGAAGACTCTTAGGGGCTTTAAGCTGGACATTTGGTCTTCACACAGGGAAAGTCTCAACTGCATTCTCTCCCCTCGCCTCCTTCTCCAACCCAATGGATGAAAAGGTCAGACAGAGGTCACTCCCCTATAACTTCTTATCCAacgggttttgagaaggaggtgaggagaggactcgaggaatcaaggaaatccAGATGAGATTCTCGCCACAGTCACCGACTAGTCCACCTCCACCTTCTCCAGAACCACATTGTGTGGCGTTCCATCCAGGTAGTAGACCATCCTCTCCCCAGCCTGGCCTTCTGAAACTCCCTCGCTCTGCTGGTCGTCCTCCCCTCCCTGGTGCTGGGTGTACATGGTCCCCTCCACCTGCAGGGTATTGTCATCCAACTCCGTCACGATGTAGTGGGTCCCTTCATCGTTGACGATCACCTGCGTCAGCCCCTCCTTCATCAGATGGCTGGCTGCAAACTGCAGAACCTCCTGGACCACCTGCTCCTCCTGCACCTGCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU280203 lncRNA downstream 24761 31100309 ~ 31100621 (-) True G245460
TU280198 lncRNA downstream 34013 31091070 ~ 31091369 (-) True G245455
TU280197 lncRNA downstream 34450 31090655 ~ 31090932 (-) True G245454
TU280195 lncRNA downstream 42169 31082908 ~ 31083213 (-) True G245452
TU280194 lncRNA downstream 42685 31082455 ~ 31082697 (-) True G245451
TU280225 lncRNA upstream 929 31127160 ~ 31127395 (-) True G245481
TU280226 lncRNA upstream 5516 31131747 ~ 31131964 (-) True G245482
TU280239 lncRNA upstream 25401 31151632 ~ 31151864 (-) True G245494
TU280219 lncRNA upstream 30789 31157020 ~ 31157830 (-) True G245475
TU280248 lncRNA upstream 47013 31173244 ~ 31173738 (-) True G245502
XM_021595923.2 mRNA downstream 192222 30930661 ~ 30933160 (-) True LOC110518255
XM_021595883.2 mRNA downstream 241824 30881668 ~ 30883558 (-) True LOC110518189
XM_021595877.2 mRNA downstream 241825 30881668 ~ 30883557 (-) False LOC110518189
XM_021595881.2 mRNA downstream 241825 30881668 ~ 30883557 (-) False LOC110518189
XM_021595854.2 mRNA downstream 243896 30861025 ~ 30881486 (-) True LOC110518140
XM_021595958.2 mRNA upstream 32195 31158426 ~ 31163476 (-) True LOC110518336
XM_036973837.1 mRNA upstream 240291 31366522 ~ 31418893 (-) False LOC110518297
XM_036973838.1 mRNA upstream 243049 31369280 ~ 31418894 (-) True LOC110518297
XM_036973841.1 mRNA upstream 436153 31562384 ~ 31581203 (-) False LOC110518371
XM_036973842.1 mRNA upstream 436153 31562384 ~ 31581203 (-) False LOC110518371
TU280109 other downstream 179539 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 907793 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 908270 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 925612 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 947974 30174013 ~ 30177408 (-) True G244379
TU280776 other upstream 436314 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2293198 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3231044 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3763275 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 3769727 34895958 ~ 34896296 (-) True G249990

Expression Profile