RNA id: TU279710


Basic Information

Item Value
RNA id TU279710
length 1362
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G245022
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31158525 ~ 31160197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaaaaactACTGTACATCTACAATACATTGTTTTTCTGTTGATTTAAGTTAATGTATTAATTATATGAATGTGtaatatgttgtgtgtgtgtgtgtgtgtgacagcatgAGAATGAGGGAGGCATTTGAACTAGAGGGGTACAGTATTCTTTTCTTGAGATAACCTTCTGTTACACCAGCAATTTTCAGTATGATCCCCGTTCATTGGGAATTTGGCTTTGCTTTATTCAGTACAATCATCAAAACATAAAGGAACTGTCTCGAACAGAACAACATTTTAGTAATATCAAAAGAGATTCAGGTGAAAAATATATTCAACTCAAGAGTACTGTAGATTGTCACAGTTTGGGTAATTTGCCTTCAACATATGTACTTGCATAGTTCATTTCATTATACATAcatatgatttgatttgtttgagGATTCCAGTGCATTCACATTAAGGCAAATCACAGTTTGCTGTCCAGTGAGGGTGGAgtcacctcaaccaccacctttCCAACATTTTTCCCAGCGTACATGTAGTCCACAGCCCTAAAGACGGACTCTAGCCCCACAAAACGGCCCTCGGGGGCCATGTCCCCACAGTCCACTTCACACACCAGCTTCCCTTTAGCAAACATCTGCATCATGCTTCCCATCGCCTCCTTGTAGTCAGACAGGAAGTGAGGTAGGAAGAACCCCCTCACGCTGGCTGACTTCTGGAGCAGCTTCACGGGCAGAGTCCCTCCTTTAACAGTTGGGACCCCTGATGCCGTTTGGTACCCTGAGATGAACCCGATCACGATCAGCCTGCCCTTATTGGCCAGATTGTTGACCGCCATGTCAAAGATTCTGCCGCCTATGGACTCGTAGACTACGTCCAGGCCTTGTGGGTACTCTTTGCGCAGCGTGGCGCTCAGGTCCTCGGACGTGTAGTTGATGGGCCTGTCGCAGCCAATGGTCTTTAAGAAGCCAGCCTTCTCATTGGAGGAGCAGGTGCCCACAACGTGGCAGCCGGCCTGTTTGGCAAACTGCACGGCGAACTGGCCCGTGCCACCGGCAGCGGCCGTCACCAGCACTGTCTCGCCCTTCACTAGGTCGCCAAGCCGCTTCATGGCTATATAAGCCGTGGCACCGcttaacagcagggtgaggaactCTGGCTTCACCGCGGGTACGGGTACGGTCTTGATCATGGGTATCACCGTGTACTCTGCAAAGGCCCCATCAGCAAAGTAGGCCACTGTGTCGCCAACGGTGTAACGGGCGCTGGCACTCAGGCCGAGTCCGACCACCTCGCCAATGCCCTCGAACCCGGCGTCAAACGGTGGCTTCACCGTAGGGTCATAGCGGCCTGCTGAGTAGTTGATGTCCGAGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279739 lncRNA upstream 2550 31155653 ~ 31155975 (+) True G245051
TU279737 lncRNA upstream 5793 31152502 ~ 31152732 (+) True G245049
TU279725 lncRNA upstream 27408 31130852 ~ 31131117 (+) True G245037
TU279570 lncRNA upstream 31580 31126545 ~ 31126945 (+) True LOC110518266
TU279702 lncRNA upstream 46865 31111458 ~ 31111660 (+) True G245015
TU279712 lncRNA downstream 44600 31204797 ~ 31205011 (+) True G245024
TU280299 lncRNA downstream 110174 31270371 ~ 31270595 (+) True G245552
TU280302 lncRNA downstream 115057 31275254 ~ 31275486 (+) True G245555
TU280351 lncRNA downstream 206324 31366521 ~ 31369680 (+) True G245601
TU280543 lncRNA downstream 300803 31461000 ~ 31461199 (+) True G245784
XM_036973836.1 mRNA upstream 30917 30939400 ~ 31127608 (+) False LOC110518266
XM_036973835.1 mRNA upstream 30919 30939321 ~ 31127606 (+) False LOC110518266
XM_021595915.2 mRNA upstream 234236 30918029 ~ 30924289 (+) False LOC110518244
XM_036973834.1 mRNA upstream 234993 30918022 ~ 30923532 (+) False LOC110518244
XM_021595890.2 mRNA upstream 253558 30902395 ~ 30904967 (+) False LOC110518221
XM_021595953.2 mRNA downstream 2201 31162398 ~ 31203098 (+) False LOC110518315
XM_021595949.2 mRNA downstream 3900 31164097 ~ 31203098 (+) True LOC110518315
XM_036973840.1 mRNA downstream 313087 31473284 ~ 31558583 (+) False LOC110518348
XM_036973839.1 mRNA downstream 313088 31473285 ~ 31558583 (+) True LOC110518348
XM_021596003.2 mRNA downstream 490415 31650612 ~ 31660620 (+) True LOC110518390
TU279568 other upstream 32258 31125406 ~ 31126267 (+) False LOC110518266
TU279677 other upstream 71270 31086769 ~ 31087255 (+) True G244991
TU279642 other upstream 121273 31036517 ~ 31037252 (+) True G244956
TU279569 other upstream 213663 30944738 ~ 30944862 (+) False LOC110518266
TU279506 other upstream 239379 30918031 ~ 30919146 (+) True LOC110518244
TU280571 other downstream 382456 31542653 ~ 31625043 (+) False G245799
TU280718 other downstream 509761 31669958 ~ 31680640 (+) True G245930
TU281088 other downstream 692471 31852668 ~ 31859319 (+) True G246282
TU282359 other downstream 1611573 32771770 ~ 32775787 (+) False LOC110518733
TU283088 other downstream 2263592 33423789 ~ 33424103 (+) True G248134

Expression Profile