RNA id: TU280248


Basic Information

Item Value
RNA id TU280248
length 310
lncRNA type intronic
GC content 0.48
exon number 2
gene id G245502
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31173244 ~ 31173738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatttttcaCGTTTAATCACAGAATAGGAAGTGGTGGGGAAAGGAAATAGGGGACAAAATGAAACAAAAAGGCCAGTGTATGGTAGTCGTACAGTTCAGAGTGCGTATATAAGCGACCGTACGGGGGCAGTTCCCGGTACCTCTGCTCTCTGAGCCTCGGTACGCTGTGTGTTTGCCTCAATGAATCATCCCAGTGGTTATGCTGTGGTAATAAGAAAACAATCTCcatgatcacacacacaaacaacatttCAAATTGCTATCATCCATCTCACCTACCCCTTtaagagcaggggggggggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280219 lncRNA downstream 15414 31157020 ~ 31157830 (-) True G245475
TU280239 lncRNA downstream 21380 31151632 ~ 31151864 (-) True G245494
TU280226 lncRNA downstream 41280 31131747 ~ 31131964 (-) True G245482
TU280225 lncRNA downstream 45849 31127160 ~ 31127395 (-) True G245481
TU280211 lncRNA downstream 47013 31125382 ~ 31126231 (-) True G245468
TU280261 lncRNA upstream 30847 31204585 ~ 31205040 (-) True G245515
TU280262 lncRNA upstream 31821 31205559 ~ 31205772 (-) True G245516
TU280444 lncRNA upstream 109270 31283008 ~ 31283293 (-) True G245688
TU280533 lncRNA upstream 260777 31434515 ~ 31440678 (-) True G245774
TU280549 lncRNA upstream 293375 31467113 ~ 31467327 (-) True G245790
XM_021595958.2 mRNA downstream 9768 31158426 ~ 31163476 (-) True LOC110518336
XM_021595923.2 mRNA downstream 240084 30930661 ~ 30933160 (-) True LOC110518255
XM_021595883.2 mRNA downstream 289686 30881668 ~ 30883558 (-) True LOC110518189
XM_021595877.2 mRNA downstream 289687 30881668 ~ 30883557 (-) False LOC110518189
XM_021595881.2 mRNA downstream 289687 30881668 ~ 30883557 (-) False LOC110518189
XM_036973837.1 mRNA upstream 192784 31366522 ~ 31418893 (-) False LOC110518297
XM_036973838.1 mRNA upstream 195542 31369280 ~ 31418894 (-) True LOC110518297
XM_036973841.1 mRNA upstream 388646 31562384 ~ 31581203 (-) False LOC110518371
XM_036973842.1 mRNA upstream 388646 31562384 ~ 31581203 (-) False LOC110518371
XM_036973843.1 mRNA upstream 388646 31562384 ~ 31581203 (-) False LOC110518371
TU280109 other downstream 227401 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 955655 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 956132 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 973474 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 995836 30174013 ~ 30177408 (-) True G244379
TU280776 other upstream 388807 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2245691 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3183537 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3715768 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 3722220 34895958 ~ 34896296 (-) True G249990

Expression Profile