RNA id: TU280351


Basic Information

Item Value
RNA id TU280351
length 2072
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G245601
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31366521 ~ 31369680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTGCCATGTTTTGTGTATTTAATGTGGACATGGTGAAATGACATTTTCTGCAACGATGTGCAAAACTTTAACAGAACTGAGAAGGCCTCAGACGAGGTAGAGCTTTCACATCGGGGACAGTGAAAACAAAGTGTAAAAACAAATCAGAAAAGAATCAAATAAATCAACTCCTGTCTGCTTCTGCTCTGATCCTTGTAACTAATAAATACAGTTGTCAACCAGATACATTTCAAACAGTGTCATCTACGGGAAAAATGACAATGTAGTTCATTACAAATAAAAAGCCAACAGACACACACGACTTGGAGGATTTGTTAAAACCCCAACCAAATAGAAATAACGACTTCCACCAAGTTCTTTGGGAGGGCACCCTTGGATAATCTACTGAACAAGTCCTCATTTTttaagcaaagagagagagagagactaaaaacGCACTCTTTATGAAACATATTTCTGTGCCTATCATTTCCCATTAGAAAACTGAACTAAGGAGTGTAATACAAACCCAAACGCCTAAAAAAAGCAAAAACACatagcaaataaaataaaataattgatatctataataatataataataatcattaaAAACCAGAGGTGACATTGAACTGGAGCACCTTAACCAGTCAAAGACTGAATGAAATGAAGACAGTTAAACGTGTTAAAGCAGTAACCTAGTCTAAGTGCACCGGAAATGCCATTTGGTATCTAACGCTGTTTACCGGGTTTGGTAAGATtaaaatacacgcacacacacacacacacacacacacacacagcaaccctACGACGGCGCCGCAGCCATCAGAAGCAAAACACTGTCTTCATCAATGCTCCCTGAAAGCTCTAGACGCCTGACCTCTCAAAAGCCACTGTTGTGAGGACTAGCTTTTAAGAGTTTAGTCTTATTCAAGTAGAAAGGAGAGCAAGGGCAACTTGAACCAAACAGTCCGACCACTTTGTTCCTGCTAAGAGGTTTCAGTAAGTGGGTATAATTTGAGGTTGTGGGTGTGGGAGGAGGACTACGCTCGGATCAGAGGGATCAGAAAAAAACggcctcctcttcttctcctccacaaTAATTGAACGACCGTTAAAACCGCACGCTCGTTTATACCCCCCATTAAAAGCGCACACTCTTTTTAATGAGCAGTAAAGCAGGCACCTCCTCTCACACTGTCattagccctctctccttccctctctctctcgttctctctccttaATGACCGGCCAAACAGCCTCGGAGTCAGATCGTGTAGTGGTCACTCCACTTCAGCCAATCATACTGGACTCATTATAGTGGTCCTCGAGaggatagaacacacacacacacacacacacactcacacacacacacacacacaccgtcttaAGTTAGCTGCAATCGGGGGGTTAGCCAAGTGTGTTCAGTTCAGTCAGTGTAAGCATCGCCAACTTGGCTGCTCCCTTCTGCCGTGTGTTTTTAAGGGATCAGTGTCCTGAGGAATGCACAAAACCATTTCATCACAATCTAAATCAAATGGGGAAAAATAGGAAAACGGAAAGCTATAGGGACGCCGCCATGCCGTCCTTGCCCATGGGTCCGCAGAGGGAAAAAACAGCATTTGTTTGCACAGTGTCCGATTTTTCTTCTCTTTCCAAGAAacccttttctttcttttttaaacaCATTTCAAATAATCCAGGTAATATTTCAAGCCAAAACGACAACGGGGGGGAGTTCACGCTGATGTCACTCTGTCAGGTGGTGTCTCTGACACAGCTCTCagttctctctgctgtctgtgggGAGGGGCTGGGAATATGGATGGAGTCTCCAGCTCTATCTTAGGCCCTGGGGATGTCACGTTGGTGGGTCTGTTATTAGGTCGCGGTGGGTCGGTGGTGTTGGGTGAGAACCAGTCTCCCGGCTCCTCCTCCTGATCGTGGTCCAGTCCCGGTGGTCTGTAATCAGGGTACTGGGCGTTGTCGAAATGTACGTGGTGGACACTCTGGACGTGGGTCTTCAGGTTCCCTTTCTGAGAGGCTCGGTACGGGCAGAGGCGGCATCGGAACGGTCTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280302 lncRNA upstream 91035 31275254 ~ 31275486 (+) True G245555
TU280299 lncRNA upstream 95926 31270371 ~ 31270595 (+) True G245552
TU279712 lncRNA upstream 161510 31204797 ~ 31205011 (+) True G245024
TU279710 lncRNA upstream 206324 31158525 ~ 31160197 (+) True G245022
TU279739 lncRNA upstream 210546 31155653 ~ 31155975 (+) True G245051
TU280543 lncRNA downstream 91320 31461000 ~ 31461199 (+) True G245784
TU280551 lncRNA downstream 98763 31468443 ~ 31468662 (+) True G245792
TU280556 lncRNA downstream 102652 31472332 ~ 31472533 (+) True G245797
TU280596 lncRNA downstream 113034 31482714 ~ 31520462 (+) True G245820
TU280569 lncRNA downstream 122527 31492207 ~ 31598351 (+) False G245799
XM_021595953.2 mRNA upstream 163423 31162398 ~ 31203098 (+) False LOC110518315
XM_021595949.2 mRNA upstream 163423 31164097 ~ 31203098 (+) True LOC110518315
XM_036973836.1 mRNA upstream 238913 30939400 ~ 31127608 (+) False LOC110518266
XM_036973835.1 mRNA upstream 238915 30939321 ~ 31127606 (+) False LOC110518266
XM_021595915.2 mRNA upstream 442232 30918029 ~ 30924289 (+) False LOC110518244
XM_036973840.1 mRNA downstream 103604 31473284 ~ 31558583 (+) False LOC110518348
XM_036973839.1 mRNA downstream 103605 31473285 ~ 31558583 (+) True LOC110518348
XM_021596003.2 mRNA downstream 280932 31650612 ~ 31660620 (+) True LOC110518390
XM_021596015.2 mRNA downstream 637356 32007036 ~ 32024542 (+) True LOC110518407
XM_021596024.2 mRNA downstream 780939 32150619 ~ 32229717 (+) False LOC110518416
TU279568 other upstream 240254 31125406 ~ 31126267 (+) False LOC110518266
TU279677 other upstream 279266 31086769 ~ 31087255 (+) True G244991
TU279642 other upstream 329269 31036517 ~ 31037252 (+) True G244956
TU279569 other upstream 421659 30944738 ~ 30944862 (+) False LOC110518266
TU279506 other upstream 447375 30918031 ~ 30919146 (+) True LOC110518244
TU280571 other downstream 172973 31542653 ~ 31625043 (+) False G245799
TU280718 other downstream 300278 31669958 ~ 31680640 (+) True G245930
TU281088 other downstream 482988 31852668 ~ 31859319 (+) True G246282
TU282359 other downstream 1402090 32771770 ~ 32775787 (+) False LOC110518733
TU283088 other downstream 2054109 33423789 ~ 33424103 (+) True G248134

Expression Profile