RNA id: TU280543



Basic Information


Item Value
RNA id TU280543
length 200
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G245784
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31461000 ~ 31461199 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGCATAACAGAGATGTAAAGTACATGTAAACACATCACTTGGTTTTATGTGGAGAGTTACTTTCATGTCCACATTTATACATGTGGTTACATTGATAATGTAAGATTATTGCCATGCAAACCCACAGCATCGTGTTATCAACAAGCACTCAAAGGCTATGGCATAAAGCAGCGTTTCCTTTTCACTCTCGCTCCCgtgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU280351 lncRNA upstream 91320 31366521 ~ 31369680 (+) True G245601
TU280302 lncRNA upstream 185514 31275254 ~ 31275486 (+) True G245555
TU280299 lncRNA upstream 190405 31270371 ~ 31270595 (+) True G245552
TU279712 lncRNA upstream 255989 31204797 ~ 31205011 (+) True G245024
TU279710 lncRNA upstream 300803 31158525 ~ 31160197 (+) True G245022
TU280551 lncRNA downstream 7244 31468443 ~ 31468662 (+) True G245792
TU280556 lncRNA downstream 11133 31472332 ~ 31472533 (+) True G245797
TU280596 lncRNA downstream 21515 31482714 ~ 31520462 (+) True G245820
TU280569 lncRNA downstream 31008 31492207 ~ 31598351 (+) False G245799
TU280572 lncRNA downstream 31008 31492207 ~ 31641357 (+) False G245799
XM_021595953.2 mRNA upstream 257902 31162398 ~ 31203098 (+) False LOC110518315
XM_021595949.2 mRNA upstream 257902 31164097 ~ 31203098 (+) True LOC110518315
XM_036973836.1 mRNA upstream 333392 30939400 ~ 31127608 (+) False LOC110518266
XM_036973835.1 mRNA upstream 333394 30939321 ~ 31127606 (+) False LOC110518266
XM_021595915.2 mRNA upstream 536711 30918029 ~ 30924289 (+) False LOC110518244
XM_036973840.1 mRNA downstream 12085 31473284 ~ 31558583 (+) False LOC110518348
XM_036973839.1 mRNA downstream 12086 31473285 ~ 31558583 (+) True LOC110518348
XM_021596003.2 mRNA downstream 189413 31650612 ~ 31660620 (+) True LOC110518390
XM_021596015.2 mRNA downstream 545837 32007036 ~ 32024542 (+) True LOC110518407
XM_021596024.2 mRNA downstream 689420 32150619 ~ 32229717 (+) False LOC110518416
TU279568 other upstream 334733 31125406 ~ 31126267 (+) False LOC110518266
TU279677 other upstream 373745 31086769 ~ 31087255 (+) True G244991
TU279642 other upstream 423748 31036517 ~ 31037252 (+) True G244956
TU279569 other upstream 516138 30944738 ~ 30944862 (+) False LOC110518266
TU279506 other upstream 541854 30918031 ~ 30919146 (+) True LOC110518244
TU280571 other downstream 81454 31542653 ~ 31625043 (+) False G245799
TU280718 other downstream 208759 31669958 ~ 31680640 (+) True G245930
TU281088 other downstream 391469 31852668 ~ 31859319 (+) True G246282
TU282359 other downstream 1310571 32771770 ~ 32775787 (+) False LOC110518733
TU283088 other downstream 1962590 33423789 ~ 33424103 (+) True G248134

Expression Profile