RNA id: TU280560


Basic Information

Item Value
RNA id TU280560
length 2003
lncRNA type read_through
GC content 0.46
exon number 4
gene id G245799
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31492207 ~ 31641357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttttttttttTAACGATTTAATGATTTTTAATTCCTTTATTTTTTCCAAGTTATTAAGTGGCTGGTCGTACATCTTTTTATTACCGATAGATACAACAATGAGGGTCTCGAGAGTTTCATTCTACATTCATTCACAGGACCCATACAAAAACACGCGCGCACATTAAGACATGGGGGAGGGgtgacagggggagacaggcagagAATGCTATAGATTACACAAATTTTTTATTTATGGAGGAAAGACTGGTGGGAGGATATTGGACAGTACAGTGGCAGTAATAAGCAGTTTTATGCAACTCATCGCTCGTACCTTGGTCAACAAACTCCACGCCCTctgtatcttttttttttataacattTATGCTTTTACACAGTTAAATAAGGAGCACCTTTATGACAGTGTTGGTGTTTTAATATCCACATGGAGTAAACACAGCACATCGTTTCTGGCAGTCAGAAATGGTATTGCTTAGCTAGCTGTTTTGTATTCATATTTTGTGCAGTGCTTCGATAGATATATGAAGCAAGAGATACTTAAGACAGAGAAGACCACACCTAATGGGGGGAAAGGGTTTGAATCTGTCCTGCCATTGGAAATGCCATGGTTGTGGCAGGTCCAGCGTGAGCTTGGTTTCAGAGCAGTCCGTGTCTGCTTTTCAAAGGTCAAAACAGTGCATTTTAGACAAATCTCCATTATATCTAGATGGGGAAACTCCCAATCCCATACACATTAGTGTCCTAATCAATCTACATGTACTGAAAATCTAATGAGAATAATATTAGAAATTATAACATCATCCATTGATTTCTACAATTCAGTGGATACTACAGGCGAGACTGTTAGTGGGTTAACTTTCAGTAGCTCGATGTCATTTTACCACGGAAGATCACAGCCAGCCATAGACCCTAATGTAAAAACATGGAAGGACAGCAACACGTAAGACAGGACACTTCACACTGATGCCACGGGACGGTAAAGACGTACAAACACATGGCCAACTGGCCATCGCAACAACCCATGCAAGCTTAGTAAGACGATGCTTAGCTATGAATTCATGTCAGGTTGTACAGGAAATGGGAGAGTGTgtggggtttggggggggggaacGACAAAGACGAGCATGACAAGACAGATAATCATTCGTTTctgaaccagaaccagacctggTCACACTTTCACAACCACAGGCGGTCAGGGCCAGGTCAATTGGACCTAAGCTACTTCAGCCAGGTCTGGTCCAGATAGCCAGCCTTGTTAGACGactctatacagacagacagacagacagagaaatagaaATGAAGACACAGGTACTGTAGAGCTACGACAGGGGTCCTTTAGGCTGTGAGAGGGGGGTCCGGATGACTTCGGCAACAGTTCACATCCAAGATGGTTGCACAGGAGAGGCGGGAGGGAGGAGCAGGGGCACAGATTGTGTCGCTATGTCTACCAGCCGGGTGCGGTGGCGGAGGCATTTGAGTTATAAAATGAACGGGTTAGAAAAGCagggaagaggtgtgtgtTCAAACATCAACAGTGGAAAACTATGCAAATGGGGTGACTCACGATCGTTCTGAAGAGGCGCACAACAGCGTTCTCCCCACCCTTAGGGGCTGCCTTGGTAGgtctgacaggagaggacaggccACGGAAAGAACCTTGCTCTTCCTCTTCTTGTCCCCTCCAAAGAAGTTCCCAATTTGATCCATAAGGCCAGGGGCCTTCTTTTTCCTTCCCAGGCTAGACAGTCCAGAGGAGCTTGCAGTTGCCATGTCGGTGGTTAGGGTTGGGTAATGCTGCTAGTATCTCTGTAAGTGGGGTTCGGTCTCTCAGGTAAGAGCGAAGGGGGTATTAAAGATCGAGAAAGGGAGGGCAAAGAAACAAACTTAGTCTAGATCCTGATCCTCTGAACCGCACTCTGATCCCGCTCCGCTGTGCTCTTGGATGGTCTGTAGCTCATCCGATTCAGAAGGGCGGTCTTTGAAGGTGTTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280596 lncRNA upstream 22191 31482714 ~ 31520462 (+) True G245820
TU280556 lncRNA upstream 70120 31472332 ~ 31472533 (+) True G245797
TU280551 lncRNA upstream 73991 31468443 ~ 31468662 (+) True G245792
TU280543 lncRNA upstream 81454 31461000 ~ 31461199 (+) True G245784
TU280351 lncRNA upstream 172973 31366521 ~ 31369680 (+) True G245601
TU280876 lncRNA downstream 121991 31703198 ~ 31703406 (+) True G246078
TU280878 lncRNA downstream 123661 31704868 ~ 31705337 (+) True G246080
TU280899 lncRNA downstream 140701 31721908 ~ 31722161 (+) True G246101
TU280921 lncRNA downstream 154424 31735631 ~ 31735864 (+) True G246123
TU280930 lncRNA downstream 159886 31741093 ~ 31741339 (+) True G246132
XM_021595953.2 mRNA upstream 339555 31162398 ~ 31203098 (+) False LOC110518315
XM_021595949.2 mRNA upstream 339555 31164097 ~ 31203098 (+) True LOC110518315
XM_036973836.1 mRNA upstream 415045 30939400 ~ 31127608 (+) False LOC110518266
XM_036973835.1 mRNA upstream 415047 30939321 ~ 31127606 (+) False LOC110518266
XM_021595915.2 mRNA upstream 618364 30918029 ~ 30924289 (+) False LOC110518244
XM_021596003.2 mRNA downstream 69405 31650612 ~ 31660620 (+) True LOC110518390
XM_021596015.2 mRNA downstream 425829 32007036 ~ 32024542 (+) True LOC110518407
XM_021596024.2 mRNA downstream 569412 32150619 ~ 32229717 (+) False LOC110518416
XM_021596031.2 mRNA downstream 571667 32152874 ~ 32229717 (+) True LOC110518416
XM_021596135.2 mRNA downstream 687442 32268649 ~ 32271705 (+) True LOC110518684
TU279568 other upstream 416386 31125406 ~ 31126267 (+) False LOC110518266
TU279677 other upstream 455398 31086769 ~ 31087255 (+) True G244991
TU279642 other upstream 505401 31036517 ~ 31037252 (+) True G244956
TU279569 other upstream 597791 30944738 ~ 30944862 (+) False LOC110518266
TU279506 other upstream 623507 30918031 ~ 30919146 (+) True LOC110518244
TU280718 other downstream 88751 31669958 ~ 31680640 (+) True G245930
TU281088 other downstream 271461 31852668 ~ 31859319 (+) True G246282
TU282359 other downstream 1190563 32771770 ~ 32775787 (+) False LOC110518733
TU283088 other downstream 1842582 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 2247013 33828220 ~ 33835275 (+) False G248750

Expression Profile