RNA id: TU281004



Basic Information


Item Value
RNA id TU281004
length 688
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G246205
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31771845 ~ 31775282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTAATGCCGCTCATTTAACCTACTCGACAACttgactcaaacagagaggaaagagctaaggctatccaacactgcaacttttccaagtcaagaggatttgagccctgggaccatgcctcaggactacctggcctgatgactcctttctgtcccctgtccacctggtcatgctgctgctccagtttcaactgttctgcctgcggctaaggaaccctgacatgttcaccggacgtgctaccttgctGTTTtcgattctctctctctaccgcacctgctgtctcgacctctgaatgctcagctatgaaaagccaactgacatttactcctgaggtgctgacctgttgaacCTTCTACAACCAatgttattatcattattattattattattatttgaccctgctggtcatctatcaacgtttgaacatcttggccatgtactgttataatttactcctgaggtgctgacctgttgaacCTTCTACAACCAATGtgattatcattatcattattattattattattatttgaccctgctggtcatctatgaacgtttgaacatcttggccatgtactgttataatctcaacctggcacagccagaagaggactggccacccctcagagcctggttcctctctaggtttcttactatgttttgacctttctagggagtttttcccagccacc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU280888 lncRNA downstream 57565 31714045 ~ 31714280 (-) True G246090
TU280879 lncRNA downstream 66561 31704867 ~ 31705284 (-) True G246081
TU280872 lncRNA downstream 76138 31688794 ~ 31695707 (-) True G246074
TU280780 lncRNA downstream 140751 31613244 ~ 31631094 (-) True LOC110518371
TU280726 lncRNA downstream 298518 31473126 ~ 31473327 (-) True G245938
TU281043 lncRNA upstream 46877 31822159 ~ 31822378 (-) True G246238
TU281057 lncRNA upstream 55161 31830443 ~ 31830646 (-) True G246252
TU281061 lncRNA upstream 56955 31832237 ~ 31832478 (-) True G246256
TU281098 lncRNA upstream 84249 31859531 ~ 31860123 (-) True G246291
TU281100 lncRNA upstream 84908 31860190 ~ 31860630 (-) True G246293
XR_005043155.1 mRNA downstream 140738 31562384 ~ 31631107 (-) False LOC110518371
XR_005043161.1 mRNA downstream 140738 31562384 ~ 31631107 (-) False LOC110518371
XM_036973842.1 mRNA downstream 190642 31562384 ~ 31581203 (-) False LOC110518371
XR_005043233.1 mRNA upstream 184761 31960043 ~ 32004356 (-) False LOC110518398
XR_005043227.1 mRNA upstream 199075 31974357 ~ 32004356 (-) False LOC110518398
XM_021596037.2 mRNA upstream 466385 32241667 ~ 32246399 (-) False LOC110518433
XM_036973845.1 mRNA upstream 466385 32241667 ~ 32246402 (-) False LOC110518433
XM_036973878.1 mRNA upstream 479464 32254746 ~ 32287276 (-) False macf1b
TU280776 other downstream 190643 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 826002 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 1554256 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 1554733 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 1572075 30199232 ~ 30199770 (-) True G244381
TU283202 other upstream 1644147 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 2581993 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3114224 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 3120676 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 4364830 36140112 ~ 36144572 (-) True G251462

Expression Profile


TU281004 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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TU281004 Expression in each Bioproject

Bar chart with 21 bars.
TU281004 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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