RNA id: TU281088



Basic Information


Item Value
RNA id TU281088
length 442
RNA type TUCP
GC content 0.43
exon number 2
gene id G246282
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31852668 ~ 31859319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcggaCCTCtgaatcatgaagaacaaggaacacaccagacaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagaatgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatatag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU280989 lncRNA upstream 55528 31796565 ~ 31797140 (+) True G246190
TU280968 lncRNA upstream 83135 31769333 ~ 31769533 (+) True G246170
TU280957 lncRNA upstream 93101 31759306 ~ 31759567 (+) True G246159
TU280934 lncRNA upstream 106703 31745322 ~ 31745965 (+) True G246136
TU280930 lncRNA upstream 111329 31741093 ~ 31741339 (+) True G246132
TU281131 lncRNA downstream 20304 31879623 ~ 31879957 (+) True G246324
TU281159 lncRNA downstream 45223 31904542 ~ 31904760 (+) True G246352
TU281227 lncRNA downstream 146543 32005862 ~ 32006068 (+) True G246413
TU281310 lncRNA downstream 150185 32009504 ~ 32009770 (+) True G246494
TU281313 lncRNA downstream 154011 32013330 ~ 32013586 (+) True G246497
XM_021596003.2 mRNA upstream 192048 31650612 ~ 31660620 (+) True LOC110518390
XM_036973840.1 mRNA upstream 294085 31473284 ~ 31558583 (+) False LOC110518348
XM_036973839.1 mRNA upstream 294085 31473285 ~ 31558583 (+) True LOC110518348
XM_021595953.2 mRNA upstream 649570 31162398 ~ 31203098 (+) False LOC110518315
XM_021596015.2 mRNA downstream 147717 32007036 ~ 32024542 (+) True LOC110518407
XM_021596024.2 mRNA downstream 291300 32150619 ~ 32229717 (+) False LOC110518416
XM_021596031.2 mRNA downstream 293555 32152874 ~ 32229717 (+) True LOC110518416
XM_021596135.2 mRNA downstream 409330 32268649 ~ 32271705 (+) True LOC110518684
XM_036973882.1 mRNA downstream 789092 32648411 ~ 32711431 (+) False LOC110518706
TU280718 other upstream 172028 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 227625 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 726401 31125406 ~ 31126267 (+) False LOC110518266
TU279677 other upstream 765413 31086769 ~ 31087255 (+) True G244991
TU279642 other upstream 815416 31036517 ~ 31037252 (+) True G244956
TU282359 other downstream 912451 32771770 ~ 32775787 (+) False LOC110518733
TU283088 other downstream 1564470 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 1968901 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 1968901 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 2115157 33974476 ~ 33977835 (+) True G248794

Expression Profile