RNA id: TU281159


Basic Information

Item Value
RNA id TU281159
length 219
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G246352
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31904542 ~ 31904760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctcattccctctctctctgttcattcagAGGTTTTATATCACAAAACTCCACACCCCCAAAAAAATGATGGGGgtgaaaaagagaaaaaaaacaataaagatTATGAAAAGCCCATCTTTACAGATCATTAGACAAGGCCAAACAACCTACAGCTATGATAGGATATATCAAAACTGACATGTAATAGTTGATTGCTGATCGCCTATTGATTGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281131 lncRNA upstream 24585 31879623 ~ 31879957 (+) True G246324
TU280989 lncRNA upstream 107402 31796565 ~ 31797140 (+) True G246190
TU280968 lncRNA upstream 135009 31769333 ~ 31769533 (+) True G246170
TU280957 lncRNA upstream 144975 31759306 ~ 31759567 (+) True G246159
TU280934 lncRNA upstream 158577 31745322 ~ 31745965 (+) True G246136
TU281227 lncRNA downstream 101102 32005862 ~ 32006068 (+) True G246413
TU281310 lncRNA downstream 104744 32009504 ~ 32009770 (+) True G246494
TU281313 lncRNA downstream 108570 32013330 ~ 32013586 (+) True G246497
TU281353 lncRNA downstream 129906 32034666 ~ 32034975 (+) True G246524
TU281449 lncRNA downstream 204214 32108974 ~ 32109187 (+) True G246619
XM_021596003.2 mRNA upstream 243922 31650612 ~ 31660620 (+) True LOC110518390
XM_036973840.1 mRNA upstream 345959 31473284 ~ 31558583 (+) False LOC110518348
XM_036973839.1 mRNA upstream 345959 31473285 ~ 31558583 (+) True LOC110518348
XM_021595953.2 mRNA upstream 701444 31162398 ~ 31203098 (+) False LOC110518315
XM_021596015.2 mRNA downstream 102276 32007036 ~ 32024542 (+) True LOC110518407
XM_021596024.2 mRNA downstream 245859 32150619 ~ 32229717 (+) False LOC110518416
XM_021596031.2 mRNA downstream 248114 32152874 ~ 32229717 (+) True LOC110518416
XM_021596135.2 mRNA downstream 363889 32268649 ~ 32271705 (+) True LOC110518684
XM_036973882.1 mRNA downstream 743651 32648411 ~ 32711431 (+) False LOC110518706
TU281088 other upstream 45223 31852668 ~ 31859319 (+) True G246282
TU280718 other upstream 223902 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 279499 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 778275 31125406 ~ 31126267 (+) False LOC110518266
TU279677 other upstream 817287 31086769 ~ 31087255 (+) True G244991
TU282359 other downstream 867010 32771770 ~ 32775787 (+) False LOC110518733
TU283088 other downstream 1519029 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 1923460 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 1923460 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 2069716 33974476 ~ 33977835 (+) True G248794

Expression Profile