RNA id: TU282459



Basic Information


Item Value
RNA id TU282459
length 235
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G247555
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32847449 ~ 32847683 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggttcaccttccaacaggacaatgaccccaggcacacagccaagacaacgcaggaggggcttcaggacaagtctttgaatgtcgttgagtggcccagccagagcccgggacttgaacccgatcgaccatctctggagaaaccttaaaataactgtgcagcgacgcttcccatccaacctgacaaagcttgagaggatctgcagagaataatgggagaaactgcccaaatacagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU282393 lncRNA downstream 50347 32796738 ~ 32797102 (-) True G247489
TU282368 lncRNA downstream 64593 32782593 ~ 32782856 (-) True G247464
TU282367 lncRNA downstream 66796 32779847 ~ 32780653 (-) True G247463
TU282366 lncRNA downstream 67866 32778918 ~ 32779583 (-) True G247462
TU282342 lncRNA downstream 75792 32771351 ~ 32771657 (-) True G247452
TU282500 lncRNA upstream 3813 32851496 ~ 32852043 (-) True G247596
TU282519 lncRNA upstream 36594 32884277 ~ 32884511 (-) True G247614
TU282521 lncRNA upstream 40709 32888392 ~ 32888684 (-) True G247616
TU282523 lncRNA upstream 45084 32892767 ~ 32892973 (-) True G247618
TU282531 lncRNA upstream 56349 32904032 ~ 32904276 (-) True G247626
XM_021596165.2 mRNA downstream 86554 32757693 ~ 32760895 (-) True LOC110518723
XM_021581911.2 mRNA downstream 209325 32596856 ~ 32638124 (-) False if36
NM_001246326.1 mRNA downstream 209377 32596864 ~ 32638072 (-) True if36
XM_021596144.2 mRNA downstream 252954 32513177 ~ 32594495 (-) True LOC110518696
XM_021596093.2 mRNA downstream 387434 32299848 ~ 32460015 (-) True LOC110518458
XM_036973888.1 mRNA upstream 158485 33006168 ~ 33013361 (-) True LOC110518755
XM_021596247.2 mRNA upstream 193990 33041673 ~ 33057433 (-) True LOC110518858
XM_021596260.2 mRNA upstream 430299 33277982 ~ 33284779 (-) True LOC110518882
XR_005051415.1 mRNA upstream 438529 33286212 ~ 33286264 (-) True LOC118964365
XM_021596266.2 mRNA upstream 453432 33301115 ~ 33337241 (-) True LOC110518895
TU280776 other downstream 1266247 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 1901606 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 2629860 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 2630337 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 2647679 30199232 ~ 30199770 (-) True G244381
TU283202 other upstream 571746 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 1509592 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 2041823 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 2048275 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 3292429 36140112 ~ 36144572 (-) True G251462

Expression Profile