RNA id: TU282521



Basic Information


Item Value
RNA id TU282521
length 293
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G247616
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32888392 ~ 32888684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttcttttggtgttttttagagtcagtagaaaggcctctttagcgtcctaagttttcataactgtgaccttaattgcctaccgtatgtaagctgttagtgtcttaacgactgttccacaggtgtgtgttcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaagatctgtgaagttatttggatttttacgaattatctttgaaagacagggtcctgaaaaagggacgtttctttttttgtttagtttattTATGAGTTCCTAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU282519 lncRNA downstream 3881 32884277 ~ 32884511 (-) True G247614
TU282500 lncRNA downstream 36349 32851496 ~ 32852043 (-) True G247596
TU282459 lncRNA downstream 40709 32847449 ~ 32847683 (-) True G247555
TU282393 lncRNA downstream 91290 32796738 ~ 32797102 (-) True G247489
TU282368 lncRNA downstream 105536 32782593 ~ 32782856 (-) True G247464
TU282523 lncRNA upstream 4083 32892767 ~ 32892973 (-) True G247618
TU282531 lncRNA upstream 15348 32904032 ~ 32904276 (-) True G247626
TU282532 lncRNA upstream 16647 32905331 ~ 32905537 (-) True G247627
TU282533 lncRNA upstream 18525 32907209 ~ 32907412 (-) True G247628
TU282535 lncRNA upstream 19038 32907722 ~ 32907928 (-) True G247630
XM_021596165.2 mRNA downstream 127497 32757693 ~ 32760895 (-) True LOC110518723
XM_021581911.2 mRNA downstream 250268 32596856 ~ 32638124 (-) False if36
NM_001246326.1 mRNA downstream 250320 32596864 ~ 32638072 (-) True if36
XM_021596144.2 mRNA downstream 293897 32513177 ~ 32594495 (-) True LOC110518696
XM_021596093.2 mRNA downstream 428377 32299848 ~ 32460015 (-) True LOC110518458
XM_036973888.1 mRNA upstream 117484 33006168 ~ 33013361 (-) True LOC110518755
XM_021596247.2 mRNA upstream 152989 33041673 ~ 33057433 (-) True LOC110518858
XM_021596260.2 mRNA upstream 389298 33277982 ~ 33284779 (-) True LOC110518882
XR_005051415.1 mRNA upstream 397528 33286212 ~ 33286264 (-) True LOC118964365
XM_021596266.2 mRNA upstream 412431 33301115 ~ 33337241 (-) True LOC110518895
TU280776 other downstream 1307190 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 1942549 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 2670803 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 2671280 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 2688622 30199232 ~ 30199770 (-) True G244381
TU283202 other upstream 530745 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 1468591 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 2000822 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 2007274 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 3251428 36140112 ~ 36144572 (-) True G251462

Expression Profile