RNA id: TU282523



Basic Information


Item Value
RNA id TU282523
length 207
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G247618
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32892767 ~ 32892973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTAACCACGTTGTCAACCACGGCCTGAcgctgagggaggctggactgCGAGTACAGCCAAATCTCAGCCGATATACAGTGGCAAGTGTGATGAGAACATTTCGActggaaaataggtattgtaaAAATATCATCATATCAAAAACATCTGCACGGTTTCAGTAACtgcttacagtactgtattctatGCACTATCAGCACTTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU282521 lncRNA downstream 4083 32888392 ~ 32888684 (-) True G247616
TU282519 lncRNA downstream 8256 32884277 ~ 32884511 (-) True G247614
TU282500 lncRNA downstream 40724 32851496 ~ 32852043 (-) True G247596
TU282459 lncRNA downstream 45084 32847449 ~ 32847683 (-) True G247555
TU282393 lncRNA downstream 95665 32796738 ~ 32797102 (-) True G247489
TU282531 lncRNA upstream 11059 32904032 ~ 32904276 (-) True G247626
TU282532 lncRNA upstream 12358 32905331 ~ 32905537 (-) True G247627
TU282533 lncRNA upstream 14236 32907209 ~ 32907412 (-) True G247628
TU282535 lncRNA upstream 14749 32907722 ~ 32907928 (-) True G247630
TU282562 lncRNA upstream 38302 32931275 ~ 32931500 (-) True G247657
XM_021596165.2 mRNA downstream 131872 32757693 ~ 32760895 (-) True LOC110518723
XM_021581911.2 mRNA downstream 254643 32596856 ~ 32638124 (-) False if36
NM_001246326.1 mRNA downstream 254695 32596864 ~ 32638072 (-) True if36
XM_021596144.2 mRNA downstream 298272 32513177 ~ 32594495 (-) True LOC110518696
XM_021596093.2 mRNA downstream 432752 32299848 ~ 32460015 (-) True LOC110518458
XM_036973888.1 mRNA upstream 113195 33006168 ~ 33013361 (-) True LOC110518755
XM_021596247.2 mRNA upstream 148700 33041673 ~ 33057433 (-) True LOC110518858
XM_021596260.2 mRNA upstream 385009 33277982 ~ 33284779 (-) True LOC110518882
XR_005051415.1 mRNA upstream 393239 33286212 ~ 33286264 (-) True LOC118964365
XM_021596266.2 mRNA upstream 408142 33301115 ~ 33337241 (-) True LOC110518895
TU280776 other downstream 1311565 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 1946924 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 2675178 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 2675655 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 2692997 30199232 ~ 30199770 (-) True G244381
TU283202 other upstream 526456 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 1464302 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 1996533 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 2002985 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 3247139 36140112 ~ 36144572 (-) True G251462

Expression Profile