RNA id: TU282717


Basic Information

Item Value
RNA id TU282717
length 4008
lncRNA type read_through
GC content 0.42
exon number 3
gene id G247789
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32932227 ~ 33025716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAATGGTCCCATGGTGCTTAACGCTGCCTTTTCCCCTTTGGATCTGTGAGAAAAGTAAAACTAGGTGAGATGTATTTCTGTCCAAGGCATCATGACGTGGCACACTGGCACTGAACCCTTTACGAACAAGGGGCGACTCTGTCTGGAATCTGTTATGTAAATCATGTCACCCCCGCCCACGTCCACCCCTGCCTGGCACAGATGGCACAGACACTGACCGGACCTTGGTCATTAAACCAGTGAGACCCACATCAAAAATAGGCTACCAGATGGAAAATATACTTGAAAATATTTTGCATGTATTTCCTCAAACATGGAACAAAGGCATGAGACCGTTTCTTACTTCCAATAAAACCAAAGCTTTACTGTCCTTCACAGAAAAATGCAACAACCTAAAAACGCATTATCCGATTACGTATCGATGTAATTGAAATGAAATCTAGTTGTGAATGACGCTGCAGATAGGAACTGGGTGCAGTTCTAACTCTTAATTTATTCATGTATTTCTAAATGATGTCCCACCAGGTGGAAAACAGACAGCAGCATCTTCAAACATCTATAAGAAAGAGGTTGACTAAGTGCCATGAGTTATTCTgccaagataaaaaataaaaaaaacagaaatatgacATCATTTCTTCCTTTTGGGATCCTGTGCCAAAGAGCCTTTTTCCTGCCAAATAGATGACACCAGAGAGTAACACACCGGCAAACCGCTCACTGAATATTGAGATAAGAATTACAGAATAATAGTGTACAATGTTTGGGTTGTATATCAATTTTCACATTCCCTATACAGGTAGTTCAATTCACCCTCTCCATTTTTGACTTAGACATGCAAAGGCCTCCAGGCACCAGTACATGCACAAAAGTGTATGTTTTATTGATGTTTGACGGCTGAATAATTCAAGGTTCACATAATGCCTGACTGCACATTATAACATACCTCCATTCTTtatccattccctctctcctgttgaatGTTGTGCCGCTTAGCATCATCGCTTAAAGGAGTTGGTTATGTAAGTGTGTACGTCTTTAGCCTTCTCCTTTTTTACATCAAGAATGACGTAATTGACCCCTAAGGTCGTTATCGCTTTCCTGAATCCAGACTTCTTCCCCCCCCCCCGTTACAgtccagctgctctctctttaTTTTGACTGCATGGCACCCAGGATGTTGGTAAATATAGCAGCTGTCCCTGTCACCAAGCAAACACCCCTCTTGAAATACACTGTGTAGCCTGACCATCATGTCTTCCACTACAGGTACGTTTTCAGCAAGTAAGGGCAAAGAAATCAGTTAAACAGTTAAACCACAAAAAATAATACTTGAAGGCAGGTTTTATACCAGATTGTATGCACTTTTAGTCTTCTAGGTCCCCCAGCCCTGATATGAGAACACCCCAAATGTTCCCCCGAAATTAGTTCAGCTTTTTGTACCTCTTAAGGCAACTGAGAAGTGTGTCATGAGCATCACAATAAAACAGCAGTACGCCAGCATTTTATGCCTCGATATGTTTTCCTTTTGTTTCTACCCGCCTCTGGATAGCTGGCACACAGCTTCAGAGTGGAATCAGATTAGGCAGCAGGCACAGTCACAGAGCTACCCACCAAACAATGCCCTAGCAACAGACTTAGCAACAGAGGAAAATTACTGCAAGGAAGACAGGCTAAATTGGGTCAATTAAATTTGCAGACAGTTCTATGTTCAGCATCTTCCGAGAGTGCAATAGGAAGGTTTTCCTCCTGCAACATAAAAAATGTCAATGTTGTTTACTTTGGGAGTGGCCTATGGCAGTGTGGGGGGAGTGTTACAGACTGGAACAAGGTCAGGTGTGCTCCCATATGAGTAAGTGCACGTGAGCCATTGTCTTTGTGCACTTCAACAGCAATCAATGTCAGGAAAATGCTATCAAGTTTGTGCATTGCTATACTCAATAGTTGTTATAGTATCATGTCCATACAGTGTCTCAATGCTGATTGAATCTCGGTAGTGCTTGTAAACCTCCTCCTGGGTCATGAGGAATGACCCAGGTAGAAGAAAAGGTCAAAGGAAATGGACTGAAACGGTGaaggactacctggacttgtcaAATAACAAGCACATATTTTCGCTTTCTgttacaaaatatttttttaaacatttcattTTCCAAGCAGGTAAATGTAACCCTGGTGGTCCCTTAGAGACCTGGGTGGAGGGTTGACAGCCTCAGATTCACAGAGAGATGTTTTTATCTAAGCCTGCCCAAGCATGCTCTCAGTAGATAAGATGCAAAACAACATGAGCATCTCCACAGCGGGAGCCGTATGGCTGCAACAAGCTCTCACGGTCTCACGTTAGAATTAGATGTTTGTCCATCTTTCTCAATCGAAATTTGACGCTTGAGAAAGATGGACGAACATGGACAAACGTTTAATTCTGACAACAGCCAGAGCGCCAGACGCCGCTGTGGAGATGGTCACGTTGGTCAACACCTCTCTGTGAATCTGAGGCTGTCAACCCTTCACCCAGGTCTCTATCTATCAAGGCACCTCCAGGGTTACATTTGTTCCCAATGTCAAATGtcgaagtgtttaaggttaagttcagccattaactctgaatttttaaggttagggcCAGGTTTGGGCATTAACTCTACATGTTTAAGGTTAGTGCCAGGttaaggcattaactctgaatttttaaggttagggccaggtttaggcattaactccaaaatcttaaggttaggcattaactccgaatgggctatggtaagggttaaggtttggggggaaaaatctaaaaaaacaactttctattgctGGATTCAAAATTGCAACCTGgcaccagaggcagatgcttaggcattaactctgaatgattTAGTTAAGGGACAAAAATCTAAAAAAACAACTTCTACAgctggatttgaacatgcaacctttggcacCAGAAGCAGATCCTTACACCCATCCCTGTCCACATCAAAAACATAAACCTACTTGAAACTAACaccgctcactgttgccccttgtGGATGGTTTCCACATAATCCCCTGACGTCCTCAGATATGGATTTAGGTCTACCACTGATTTGGCatcatgggtgacctggctgtGTTGTTCACAGTGTTCCTGGCTTTGTTCCTATGGCTGGAACTTATGCAATCAACTGGGCATCAAACCTGGGTGTTTTGCACAAGACTATGTTAGCTTACCAAGCTAAAGTCTATAGACCTCAGCTCTGGGAGTTAACAGTAATTTtctgttttaaattaaaatggtcaaaaagaaacaaaaatagcttcttagcaaagagcaatttctcaaagaagaattttgctaggactgtctgggagtggtctgagtgggaagggGAAAACTGAAATTAGCTgtcattggcagagaggtttggaacactctttgttattggtctattaacacatttaccacctggtgatgtcaccaggcaggccaaaatgccatcccaccaaaacaggctgacattttaGGTGGTCTATTCAAACAGCTCtaacactaaaagggcattatcataattttcacagttTCACGGTATTTTtctaacctcatagtgtggaaatatataagaCCTCTGGGCCTTTAAATAGCTGCACAGATCTGCAGGGTATGGAAAGCTCATATTTAACAAGATAACTCATTTAGTTATGAAAGCTAATTTAGTGGGTATGATGGTTTCATTTACttcttattgttttatttgttatttGCACTACACTTTATTTCTGAGCTGGGAATTACTTCATGATACTGCATCCTCATTCTGTTCAATCAGTATATTGTCTGCCTGCTTGGCTTTGTTATAtagtccaataataataataataatttattgaaAGCCATATTAAAAAAGAGAACATAAGCTCATTGGACACGTTGTGTATGTGCAGGTATTGTgtatggtttgtgtgtgtttgtgtgtgtatgtgtgtgtatgtgcgtgcgtgtgtgtTGGTGCGTGtgtgtgtgtgcgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282562 lncRNA downstream 727 32931275 ~ 32931500 (-) True G247657
TU282535 lncRNA downstream 24299 32907722 ~ 32907928 (-) True G247630
TU282533 lncRNA downstream 24815 32907209 ~ 32907412 (-) True G247628
TU282532 lncRNA downstream 26690 32905331 ~ 32905537 (-) True G247627
TU282531 lncRNA downstream 27951 32904032 ~ 32904276 (-) True G247626
TU282781 lncRNA upstream 10484 33036200 ~ 33036500 (-) True G247847
TU282792 lncRNA upstream 21919 33047635 ~ 33048593 (-) True G247855
TU282808 lncRNA upstream 40128 33065844 ~ 33067704 (-) True G247868
TU282941 lncRNA upstream 185764 33211480 ~ 33211791 (-) True G247994
TU283106 lncRNA upstream 221665 33247381 ~ 33247876 (-) True G248152
XM_021596165.2 mRNA downstream 171332 32757693 ~ 32760895 (-) True LOC110518723
XM_021581911.2 mRNA downstream 294103 32596856 ~ 32638124 (-) False if36
NM_001246326.1 mRNA downstream 294155 32596864 ~ 32638072 (-) True if36
XM_021596144.2 mRNA downstream 337732 32513177 ~ 32594495 (-) True LOC110518696
XM_021596093.2 mRNA downstream 472212 32299848 ~ 32460015 (-) True LOC110518458
XM_021596247.2 mRNA upstream 15957 33041673 ~ 33057433 (-) True LOC110518858
XM_021596260.2 mRNA upstream 252266 33277982 ~ 33284779 (-) True LOC110518882
XR_005051415.1 mRNA upstream 260496 33286212 ~ 33286264 (-) True LOC118964365
XM_021596266.2 mRNA upstream 275399 33301115 ~ 33337241 (-) True LOC110518895
XM_036973905.1 mRNA upstream 357264 33382980 ~ 33401872 (-) False ube3d
TU280776 other downstream 1351025 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 1986384 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 2714638 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 2715115 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 2732457 30199232 ~ 30199770 (-) True G244381
TU283202 other upstream 393713 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 1331559 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 1863790 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 1870242 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 3114396 36140112 ~ 36144572 (-) True G251462

Expression Profile