RNA id: TU282725



Basic Information


Item Value
RNA id TU282725
length 287
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G247795
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32977539 ~ 32992435 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caacagtgtctcggacctgcctggtgtgttccttgttcttcgtgatgctctctgcgcttttggcggacctctgagactatcacagtgcaggtgcatttgtacggagacttgattacacacaggtggattgtatttgtcATCATTGGTCATTTGGGTCAGCATTGGATCGTTCGGAGATCCtcgctgaacttctggagagagtttgctgcactgaaagtgggGGGGCTGaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU282562 lncRNA downstream 46039 32931275 ~ 32931500 (-) True G247657
TU282535 lncRNA downstream 69611 32907722 ~ 32907928 (-) True G247630
TU282533 lncRNA downstream 70127 32907209 ~ 32907412 (-) True G247628
TU282532 lncRNA downstream 72002 32905331 ~ 32905537 (-) True G247627
TU282531 lncRNA downstream 73263 32904032 ~ 32904276 (-) True G247626
TU282715 lncRNA upstream 27151 33019586 ~ 33021621 (-) True G247787
TU282781 lncRNA upstream 43765 33036200 ~ 33036500 (-) True G247847
TU282792 lncRNA upstream 55200 33047635 ~ 33048593 (-) True G247855
TU282808 lncRNA upstream 73409 33065844 ~ 33067704 (-) True G247868
TU282941 lncRNA upstream 219045 33211480 ~ 33211791 (-) True G247994
XM_021596165.2 mRNA downstream 216644 32757693 ~ 32760895 (-) True LOC110518723
XM_021581911.2 mRNA downstream 339415 32596856 ~ 32638124 (-) False if36
NM_001246326.1 mRNA downstream 339467 32596864 ~ 32638072 (-) True if36
XM_021596144.2 mRNA downstream 383044 32513177 ~ 32594495 (-) True LOC110518696
XM_021596093.2 mRNA downstream 517524 32299848 ~ 32460015 (-) True LOC110518458
XM_036973888.1 mRNA upstream 13733 33006168 ~ 33013361 (-) True LOC110518755
XM_021596247.2 mRNA upstream 49238 33041673 ~ 33057433 (-) True LOC110518858
XM_021596260.2 mRNA upstream 285547 33277982 ~ 33284779 (-) True LOC110518882
XR_005051415.1 mRNA upstream 293777 33286212 ~ 33286264 (-) True LOC118964365
XM_021596266.2 mRNA upstream 308680 33301115 ~ 33337241 (-) True LOC110518895
TU280776 other downstream 1396337 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 2031696 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 2759950 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 2760427 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 2777769 30199232 ~ 30199770 (-) True G244381
TU283202 other upstream 426994 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 1364840 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 1897071 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 1903523 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 3147677 36140112 ~ 36144572 (-) True G251462

Expression Profile