RNA id: TU282587



Basic Information


Item Value
RNA id TU282587
length 460
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G247681
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32978569 ~ 32993640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttcttcacaacagtatctcggacctgcctggtgtgttctttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtgtttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttGCCAAAAAAGCCTGAAACATCCAACAAATGTCGCTCCACCCCATGACCGCGTCCCACCCGCCGCCGACTCcccacaaaaaaacacagcccCACATCTCCATGTCCGAAGCCCGAAACGTGGCAAAAGGCCGCAAAGCCCAAGGGGGCCGAACACCCCCGCAAGGcactgcacatacacatatacata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU282484 lncRNA upstream 86132 32892193 ~ 32892437 (+) True G247580
TU282478 lncRNA upstream 95432 32882916 ~ 32883137 (+) True G247574
TU282445 lncRNA upstream 142939 32835431 ~ 32835630 (+) True G247541
TU282385 lncRNA upstream 185032 32793334 ~ 32793537 (+) True G247481
TU282353 lncRNA upstream 197844 32779838 ~ 32780725 (+) True G247453
TU282933 lncRNA downstream 213044 33206684 ~ 33206889 (+) True G247986
TU282940 lncRNA downstream 217927 33211567 ~ 33211936 (+) True G247993
TU282953 lncRNA downstream 223469 33217109 ~ 33217352 (+) True G248006
TU282954 lncRNA downstream 223823 33217463 ~ 33217694 (+) True G248007
TU282963 lncRNA downstream 236064 33229704 ~ 33230060 (+) True G248016
XM_021596180.2 mRNA upstream 125764 32850909 ~ 32852805 (+) False LOC110518743
XM_021596186.2 mRNA upstream 125764 32850948 ~ 32852805 (+) True LOC110518743
XM_021596172.2 mRNA upstream 201160 32771075 ~ 32777409 (+) False LOC110518733
XM_036973882.1 mRNA upstream 267138 32648411 ~ 32711431 (+) False LOC110518706
XM_021596212.2 mRNA downstream 25771 33019411 ~ 33035356 (+) False LOC110518767
XM_021596219.2 mRNA downstream 25772 33019412 ~ 33035356 (+) False LOC110518767
XM_021596208.2 mRNA downstream 30977 33024617 ~ 33035356 (+) False LOC110518767
XM_021596235.2 mRNA downstream 30979 33024619 ~ 33035356 (+) False LOC110518767
XM_021596214.2 mRNA downstream 30980 33024620 ~ 33035356 (+) False LOC110518767
TU282359 other upstream 202782 32771770 ~ 32775787 (+) False LOC110518733
TU281088 other upstream 1119250 31852668 ~ 31859319 (+) True G246282
TU280718 other upstream 1297929 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 1353526 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 1852302 31125406 ~ 31126267 (+) False LOC110518266
TU283088 other downstream 430149 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 834580 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 834580 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 980836 33974476 ~ 33977835 (+) True G248794
TU283840 other downstream 1012518 34006158 ~ 34013057 (+) True G248795

Expression Profile