RNA id: TU282976



Basic Information


Item Value
RNA id TU282976
length 446
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G248029
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33247352 ~ 33247797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccacccgatgtcacaggaacgccataaagatcatcaaggacaacaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcattaaagcagggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacacactgactcaactccagccactttaataatgggaattgatggaaattgatgtaaaatatatcactagccactttaaacaatgctacttaatataatgtttacataccctacattactcatctcatatgtatatactgtaccctatatcatctactgcatctttatgtaatacatgtatcactagccactttaaactatgccactttgtttacataccctacattactctcatatgtatatac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU282975 lncRNA upstream 3091 33244055 ~ 33244261 (+) True G248028
TU282963 lncRNA upstream 17292 33229704 ~ 33230060 (+) True G248016
TU282954 lncRNA upstream 29658 33217463 ~ 33217694 (+) True G248007
TU282953 lncRNA upstream 30000 33217109 ~ 33217352 (+) True G248006
TU282940 lncRNA upstream 35416 33211567 ~ 33211936 (+) True G247993
TU283011 lncRNA downstream 50361 33298158 ~ 33298382 (+) True G248061
TU283019 lncRNA downstream 72566 33320363 ~ 33321442 (+) True G248069
TU283030 lncRNA downstream 99757 33347554 ~ 33347893 (+) True G248080
TU283040 lncRNA downstream 105247 33353044 ~ 33353279 (+) True G248090
TU283061 lncRNA downstream 133721 33381518 ~ 33381736 (+) True G248111
XM_036973900.1 mRNA upstream 74637 33086509 ~ 33172715 (+) False LOC110518871
XM_021596255.2 mRNA upstream 74637 33087703 ~ 33172715 (+) True LOC110518871
XM_036973897.1 mRNA upstream 178741 33057896 ~ 33068611 (+) False LOC110518846
XM_021596277.2 mRNA downstream 93570 33341367 ~ 33344522 (+) True tpbgb
XM_036973902.1 mRNA downstream 154053 33401850 ~ 33442072 (+) False LOC110518918
XM_021596291.2 mRNA downstream 154097 33401894 ~ 33442072 (+) False LOC110518918
XM_021596298.2 mRNA downstream 154097 33401894 ~ 33442072 (+) False LOC110518918
XM_021596303.2 mRNA downstream 154097 33401894 ~ 33442072 (+) False LOC110518918
TU282359 other upstream 471565 32771770 ~ 32775787 (+) False LOC110518733
TU281088 other upstream 1388033 31852668 ~ 31859319 (+) True G246282
TU280718 other upstream 1566712 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 1622309 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 2121085 31125406 ~ 31126267 (+) False LOC110518266
TU283088 other downstream 175992 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 580423 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 580423 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 726679 33974476 ~ 33977835 (+) True G248794
TU283840 other downstream 758361 34006158 ~ 34013057 (+) True G248795

Expression Profile