RNA id: TU283040



Basic Information


Item Value
RNA id TU283040
length 236
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G248090
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33353044 ~ 33353279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtgtatgtaaactttcgacttcaactgcatgtcttcaaaatgtaattgtgttttaCTTTTCATATTTTTTTGACAAATGTTTGAATTTTTCTTCCAAATTGACGTTACAGGATATTTTGTGTGGATTGTTGACaacaaaattacaattaaatccattttaatcctaccttgtaacacaacaaaatttggaaaaagtcaaggggtgtgaatactttctgaaggcactgtattttgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU283030 lncRNA upstream 5151 33347554 ~ 33347893 (+) True G248080
TU283019 lncRNA upstream 31602 33320363 ~ 33321442 (+) True G248069
TU283011 lncRNA upstream 54662 33298158 ~ 33298382 (+) True G248061
TU282976 lncRNA upstream 105247 33247352 ~ 33247797 (+) True G248029
TU282975 lncRNA upstream 108783 33244055 ~ 33244261 (+) True G248028
TU283061 lncRNA downstream 28239 33381518 ~ 33381736 (+) True G248111
TU283062 lncRNA downstream 28574 33381853 ~ 33382146 (+) True G248112
TU283063 lncRNA downstream 29187 33382466 ~ 33382698 (+) True G248113
TU283070 lncRNA downstream 41195 33394474 ~ 33395206 (+) True G248120
TU283084 lncRNA downstream 64050 33417329 ~ 33417641 (+) True G248130
XM_021596277.2 mRNA upstream 8522 33341367 ~ 33344522 (+) True tpbgb
XM_036973900.1 mRNA upstream 180329 33086509 ~ 33172715 (+) False LOC110518871
XM_021596255.2 mRNA upstream 180329 33087703 ~ 33172715 (+) True LOC110518871
XM_036973898.1 mRNA upstream 284433 33057899 ~ 33068611 (+) False LOC110518846
XM_036973902.1 mRNA downstream 48571 33401850 ~ 33442072 (+) False LOC110518918
XM_021596291.2 mRNA downstream 48615 33401894 ~ 33442072 (+) False LOC110518918
XM_021596298.2 mRNA downstream 48615 33401894 ~ 33442072 (+) False LOC110518918
XM_021596303.2 mRNA downstream 48615 33401894 ~ 33442072 (+) False LOC110518918
XM_021596285.2 mRNA downstream 48615 33401894 ~ 33442397 (+) False LOC110518918
TU282359 other upstream 577257 32771770 ~ 32775787 (+) False LOC110518733
TU281088 other upstream 1493725 31852668 ~ 31859319 (+) True G246282
TU280718 other upstream 1672404 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 1728001 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 2226777 31125406 ~ 31126267 (+) False LOC110518266
TU283088 other downstream 70510 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 474941 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 474941 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 621197 33974476 ~ 33977835 (+) True G248794
TU283840 other downstream 652879 34006158 ~ 34013057 (+) True G248795

Expression Profile