RNA id: TU283429


Basic Information

Item Value
RNA id TU283429
length 486
lncRNA type antisense_over
GC content 0.53
exon number 3
gene id G248441
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33532950 ~ 33574056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGGTCTCCTGAAGGCAAGGCCATACATCTGGCAGGCCAGGCCCACGGTGGGGGTGTAAACGATAGGCATGAACCTCTCTGTGTCGGACGTCAGCACACGGTAGAACAGCTTCTCATTCCTGTCCTGGAGCCCCATCAGAAACACATATCTGTCCAGGTCGTCCCTCTTCATCTCGTAGTTCTTGAGGACCCGGAGGAGCTGCACGTCCTGGCTGAGGAAGCAGGGAGGCAGCAGGCCGTGGATCCCCAGCTGGAGTCGTTCCTCCAGGGAGAAGGCCATGCCCTTGTTCAGATAGGGGTTACGTGTAACGTCATACCCCCTCTTCTTCGTGTAAACAAACATTTTACTTTGGTCTTCGGATTTATGCATCTCACTCTCGACCGATTCCCGTTTGACTAAACCGTGTGCCATGTTGCCTCCCTCTTTAAATAGCGTACAGTAACCCTGAACTCTGTTATGAACCCAAGTCAACAAGTGGATGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283421 lncRNA downstream 4015 33528591 ~ 33528935 (-) True G248435
TU283393 lncRNA downstream 51518 33481121 ~ 33481432 (-) True G248408
TU283230 lncRNA downstream 83457 33449238 ~ 33449493 (-) True G248265
TU283219 lncRNA downstream 90016 33442724 ~ 33442934 (-) True G248256
TU283206 lncRNA downstream 107894 33424732 ~ 33425056 (-) True G248243
TU283501 lncRNA upstream 42219 33616275 ~ 33655692 (-) True G248501
TU283485 lncRNA upstream 72707 33646763 ~ 33649320 (-) True G248491
TU283664 lncRNA upstream 187224 33761280 ~ 33761522 (-) True G248660
TU283682 lncRNA upstream 198319 33772375 ~ 33772771 (-) True G248678
TU283712 lncRNA upstream 222948 33797004 ~ 33797224 (-) True G248708
XM_021596338.2 mRNA downstream 19567 33507594 ~ 33513383 (-) True prss35
XM_036973905.1 mRNA downstream 131078 33382980 ~ 33401872 (-) False ube3d
XM_036973906.1 mRNA downstream 131078 33382980 ~ 33401872 (-) False ube3d
XR_005043583.1 mRNA downstream 131078 33382980 ~ 33401872 (-) True ube3d
XM_021596266.2 mRNA downstream 195709 33301115 ~ 33337241 (-) True LOC110518895
XM_021596343.2 mRNA upstream 236589 33810645 ~ 33818250 (-) True prdm13
XM_021596349.2 mRNA upstream 254167 33828223 ~ 33835034 (-) False zgc:172323
XM_021596357.2 mRNA upstream 254167 33828223 ~ 33835034 (-) True zgc:172323
XM_021596363.2 mRNA upstream 264906 33838962 ~ 33844810 (-) True tstd3
LOC110519190 mRNA upstream 471547 34045603 ~ 34046368 (-) True LOC110519190
TU283202 other downstream 113243 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 1951748 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 2587107 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 3315361 30211570 ~ 30217589 (-) False G244393
TU284611 other upstream 783219 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 1315450 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 1321902 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 2566056 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 2783427 36357483 ~ 36357971 (-) True G251681

Expression Profile