RNA id: TU284106


Basic Information

Item Value
RNA id TU284106
length 4358
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G249026
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33950569 ~ 33955080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACAGCTATTGTTTAATTGAATCATTGAGAGTAATCATTGTCATCATAATAGGACATCCATGGCAGTATGTTACAGTGAGTTTATCACACTTGCGTACATTTCCCAGCAATGTAATGTTTCCACTAGCAGGAAATATATTGTTCTAATATAGCTTGACAAAGCAGTCGCACTGCCACGAGTTATTCATATGTAGAATGGTAAAAACACATCCCAATAATATAACGCAGGTTGATGTTTTTTGGGGATCAGTCaggttctggaggcagctctgcccCATATGATAGCGTCGCCTCTGCTGTTCTCTCATCGAGGGTCTGGTCTACCTATGcttctaaaaaaaatatatattttcaacaaTAGGACAACGCAATTCAATCAAACTCCCTTAAAAATATTTTCTCAATTACAGACACAAAAAAAGTCTAATTAAAAGACACTTGAGAAAAGGTTTAGACAGATCCATGTCTTGGTccacattgttttgcaatggtatGTTTCATCATCGGGAGGTAGGGTGAGCATAATCCTAGCAGATTGacattttactgttttatttggTATTTTGTCCATGTGCCTTTGCAAACAACTATTTACTTTGACATTGCTACTTTGCGAATAAATATGATCTTCTCTCAGGCTCATCCTGATTACACACCTATCAATATTCCAACTTAAATGCCTAGCTACTACACAGACATCCAGTGACCTGTGTCATTGATATACTGCACATGTCTCATTCCATTCATTTGACCTTACCATCTTCTCATCACAATCCCCAGCGTCCTAGGTGCGTTAGTTTTGCCCATTTTAAACATGACAACAAAAATATTGCAAAAATATTGCAAAAATATTGCAAAAAGTGCTGGCACTGTTTTCAAATAAGTGTGAGTTCACTGAGTAAAGAAAGCAAAATCAAACCTGTATGATTCAAACCTGTACGATTCATATTCAACCCCTCTCTTCATAATTTCTGTGCACTATGGCTTAAACCATACCTGGTAATGTAGTCATATTACAGCCCACTATCATTTTTccggtctctttctctcacacacacagacacacacaaacacacacctaaaAGGATAACACTACTTGCTACAAATGGGCCTTTCCATTCTGTTTCAGTAACTTTCTGTATTAGTTTGGTGTTAATACTGTAATAAAGTGAAAACGAATGCAGCTGTTTTTTATCTCAatttcaaatcatttctgggtaacatgattgttttcaattcaaatggcCAACAAGAAACAAAaacagcttcttagcaaagagcaaattgtcaagcaagaatttagctaggactgtctggtagtggtctggatggggaggggaaaactgaaaactagctgttattggcagacagGTTTAGAACTCCATTTCCTAATGGTCTATTCTTATTGGTCtgactccatcccaccaaaactgACTGAcctttcaggcagtcttttcaaacagctgttATATTAAAAGggtattatcatcattttcacaatatcattccaacctcagtgtggaaatatataaagtcgaagtcggaagtttacatacaccttagccaaatacatataaactcagtttttcacaattcctgacatttaatcctagtaaaaattccctgttttaggtcagttaggattaccactttattttaagaatgtgaaatgtcaggataatagtaggacaattatttatttcagcttttatttctttcatcacattcccagtgggttagaagtttacctacactcaattagtatttggtagcattgcctttaaattgtttaacttgggccaaacgtttcaggtagccttccacaagcttcccacaataagctgggtgaattctggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcgcgcacgctttttcagttctgcccacacattttcaatgggattgaggtcagggctttgtgatggccactccaataccctgactttgttgtccttaagccattttgccacaactttggaagtatgtttagggtcattggccatttggaaaacccatttccgaccaaggtttaacttcctgactgatgtcttgagatgttgcttgcaagcctccccctttttcctccaaacataacgatggtcattatggccaaacagttctatttttgtttcatcagaccaggggacatgtccccatgtgcagtggcaaaccgtagtctggctttttttatgccggttttggagcagtggcttcttccttgctgagcggccttccaggttatgtcgatataggactcattttactgtggatatagatacttctgtacctgtttcgtCCAGCATATttgcaaggtcctttgctgttgttctgggattgatttgcacttttcgcaccaaagtacgttcatctctaggagagagaatgagtctcctccctgagcggtatgacggctgcatggtcccatggtgtttatacttgcgtcctattgtttgtacagatgaacgtggtgccttcaggcatctggaaattgctcccaaggatgaaccagacttgtggaggtgtaaAAAAAATGTCTGAGGTCTTGaaagatttcttttgattttcccatgatgtcaagcaaagaggcactgagtatgaaggtaggccttcaaatacatccacaggtacacctccaattgactcaaataatgtaaattagcctatcagaagcttctaaagccataacatcattttctggaattttccaaactgtttgaaggcacagtcaacttagtgtatgtaaacttctgacccactggaatggtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaaattacttgtgtcatgaacaaagtagatgtcctaaccgacttgccaaagctatggTTTGTTATCAacaaatttgtggaatggttgaaaaactagttgtaatgactccaacccaagtgtatgtaaacttccaacttcaactgtataaaacacaggaaTATCACactttgactgcactgggcctttaacattCCAAGTGGCAAAAACTGCAGGACTCGAGACCATAGAGCTAAATAGACAGCAGGATGAATGTATAGATAGAGCACCCTCTAGTGGTGAGATACAAGATTCGGCTCTACAACCAGCCTGTACTGGTAAGTGTACCAGAGTGTTACATCTCCAGTTCCTTTTGCCCATCCCAATCTCCTTTACTAGAGTGAAGTTAGACACAAATGGTTGATGGAAAGGCCAGTGATTGTGGCTGATGCTCAGCAGCAAGCCACAAACCATAGGACTACTGGTAGAATAGCCCACCGTTAGTAAGACACAGACTAGAGCAGCCGCCATAGTAAGCAGActctttatatatatacatatatcacTTTACAATATGTGTCCAAGTCTTAGCAAATTACTGACCCCTGTTCTCTAAAATCCAGTGATTTCGTGTTTCTGCTACCTTCACCATCATCATGGTCTCTCTTTCACTAGTTACATTTCTAAGAAACAGCCGTGTTGCCTGTATTCCATGGACAGACACACCTGTTTTCACCAACAATCTCTCTCAAAATGTTTCACGCTAGCCTGTACCCTGGGACAACTGACACAAATAAGGCAACGTCTGTGATTGTGACATGTTGGCAATGTCACCATCACTCGGGGTGAGGAAATCATAATGCAACGCATGTAACATGGGGTTCGATTTATACGCTCTGCATACAAATACCCAGTTTGTCTGAGTGCACTGATATTACATTGTTAGGATATAGTTTTCAGTCATCATGGAATATAACTGTGCCTCCATGTGTGAGCACAGATctctgaaagagagggagaggcagcagcagaagCGATAACTGTGCCTCTGTGTTCCGCGGCTCTATGGTGCCAATCCAGATAGCAGCGCCCTGATTAGTTTGACGTTCCGGCCGTCTGACCGCCTCAGCCAAAACCACCCCACCTCACTGGATGAGGGTGGGTCAAGGGTTGGGAGGTTTGGGACTGGGGTTGGAAGGGGCAGAATTAGGGGGGTCAGGACTAGGAGGGTCACACTTGAGCTGCGGCTCGTTCTCCGAGCCCGTGCCCACGTCTGAGTCGAACAGCGAGTGGTCCGTATTGggggagtgagtgtgtgagtgtgtgtgtttgtcagaggCTTCACTCTCCTCCATGGTGTCTGTCCGGGAGAACAGGCCAAAGTCCATCAGGCATGTAGGAGAGCCCTCGCTGCTGTCAGTGTCTGCTCCGTCATAGCACAGGTCCTCTATGTTCACAAACCACTCAGGCCAGAACTTTCTCCGCATGCGCTcacagaacatggccaagttgACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284087 lncRNA downstream 22102 33927952 ~ 33928467 (-) True G249012
TU284072 lncRNA downstream 42593 33907683 ~ 33907976 (-) True G248997
TU284070 lncRNA downstream 54115 33896244 ~ 33896454 (-) True G248995
TU284069 lncRNA downstream 55008 33895294 ~ 33895561 (-) True G248994
TU283729 lncRNA downstream 143222 33807112 ~ 33807347 (-) True G248724
TU284148 lncRNA upstream 84257 34039205 ~ 34041147 (-) True G249067
TU284282 lncRNA upstream 298723 34253671 ~ 34253894 (-) True G249188
TU284342 lncRNA upstream 334058 34289006 ~ 34289230 (-) True G249236
TU284563 lncRNA upstream 342659 34297607 ~ 34297837 (-) True G249449
TU284561 lncRNA upstream 343983 34298931 ~ 34301241 (-) False klhl32
XM_021596363.2 mRNA downstream 105759 33838962 ~ 33844810 (-) True tstd3
XM_021596349.2 mRNA downstream 115535 33828223 ~ 33835034 (-) False zgc:172323
XM_021596357.2 mRNA downstream 115535 33828223 ~ 33835034 (-) True zgc:172323
XM_021596343.2 mRNA downstream 132319 33810645 ~ 33818250 (-) True prdm13
XM_021596338.2 mRNA downstream 437186 33507594 ~ 33513383 (-) True prss35
LOC110519190 mRNA upstream 90655 34045603 ~ 34046368 (-) True LOC110519190
XM_021596405.2 mRNA upstream 123250 34078198 ~ 34081695 (-) True pou3f2b
XM_036964818.1 mRNA upstream 133895 34088843 ~ 34248604 (-) True LOC110504035
XM_036973918.1 mRNA upstream 336562 34291510 ~ 34301358 (-) False klhl32
XM_036973919.1 mRNA upstream 336562 34291510 ~ 34301359 (-) False klhl32
TU283202 other downstream 530862 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 2369367 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3004726 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 3732980 30211570 ~ 30217589 (-) False G244393
TU284611 other upstream 402327 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 934558 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 941010 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 2185164 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 2402535 36357483 ~ 36357971 (-) True G251681

Expression Profile