RNA id: TU284148


Basic Information

Item Value
RNA id TU284148
length 1578
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G249067
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34039205 ~ 34041147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCTTCATTTTATTTCAAATTAAAGCACCCAGTTTCGTCGTAGTACAGGTGCAACCTTTTTCAACACTTTCGAGTGGTTATCTGCCAGTGAGTCTTGACGACACCACACCTGACATTCACACTTAGTTAAGGGTACATTACTAAAGGTTCTACAAATGGCACTAAGTTTGACCACACACACGCATCCAAAACTGACTGGGGGAAAGTCCATCAATGCAAAAAATAGCAGGTCCACATCAATAAATGCCTCTAAATAAAAGTAGCATTACAATGTGGCGAAAACTGTGGTGACTTTGGTCAGCTAGTGACCGGACAAAGGAGAGAAACTAGATTTGTGTAGCGGGATGACAGATTGTGTGTGTTCGTTGCACGAATGTTAACATTAATATGTGTTTTTCAATAGTTTCCCTGTGCAGGTTACTTTAGTGATTTGAGCGTGACCAGACCACGTTCCCACAGATAAAATAATATGTAATCCAAAAAGCAGACATAACTGCCACTTAATAAAAAAAGGGAATTGAAAGATGGCGATAAGATTCTGCTTAAAATGAAGCGATCTCCCATGCACATGCGAAGATGCTCTGTACGGGACTGTGGGTGCTCACATGTACAGCCTATTGTAAAGCGTTTATTcctaaatatatatttgtttcacACTGCTGCTCGTATCGCTGAGTCTCAGTTTAAAGGAAATGCTAACGTAGCATTGGAGATGTGCAATAATATATTACAAGATCAATAAATAATTAAGGATATTGATATCATTTTACAATCATACAATTTGCACAATATTCaacataaaaacattttttgtctCAGTATCAGTGCCCAATGTACATTTTTCCCAGAATTCTCGTTGTCTCAGAACAAATCAAACAGGACTCAAATGTTTCTCTCAGAATAAAAGGAGGCTCTTCTGCTGGtttctgaaaaaaaaaacatctacataaTAATTGAACAATATGAACAAGATAAAACCCCTGAGATTTCAGATTCCGATAAAACACTGAGGTCAGACATTTTACAAATGAGTCACAGGAGGGGTGGACAGATGACAAGCAGCCGCCACCAGATGTGTCAGTTACTAGGCTGACCAACAATGAAATCTAGCGACTTTGGCACCCGTGACCCTGATTTCAACCAGTTTCTCCTCTCAAGACTCTCTCTTGTATTCAGCGGCTTAACATGAGGAGACTGTGTTGAGATGTAGGTGAGGTGTTCAGCCGATGCTCATGTCACTCCTAACCATTTAGTCCATATTATAATAGGCCTCAGTGCTCTCGGCCATCAGACCCCATTCATTCTACCCACTGGGCATTCAGTAATACTCCACCCcactagtcaaaagtagtgcctcCCCCTGGTGTCGCTGTGACGGTGTCCCTGTGTCACTGCCCCTGTGTGAGGGTGTGGCTGGGTGAGGTCACTGGGTAAAGCTCTTCTTGATGGCCACATTGGGGAAGAGTCCGCAGAGCTCTTGGACAATGCGGGCGTCCACCTGCGCGCAGAAGGACACGTCCAGGAGGAGGAGCTTCGGACACGCCTGCAGCAGCTTCCTCAGGGAGGAGGAGCTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284105 lncRNA downstream 84125 33950569 ~ 33955080 (-) False G249026
TU284106 lncRNA downstream 84257 33950569 ~ 33954948 (-) True G249026
TU284087 lncRNA downstream 110738 33927952 ~ 33928467 (-) True G249012
TU284072 lncRNA downstream 131229 33907683 ~ 33907976 (-) True G248997
TU284070 lncRNA downstream 142751 33896244 ~ 33896454 (-) True G248995
TU284282 lncRNA upstream 212524 34253671 ~ 34253894 (-) True G249188
TU284342 lncRNA upstream 247859 34289006 ~ 34289230 (-) True G249236
TU284563 lncRNA upstream 256460 34297607 ~ 34297837 (-) True G249449
TU284561 lncRNA upstream 257784 34298931 ~ 34301241 (-) False klhl32
TU284562 lncRNA upstream 260119 34301266 ~ 34301549 (-) False klhl32
XM_021596363.2 mRNA downstream 194395 33838962 ~ 33844810 (-) True tstd3
XM_021596349.2 mRNA downstream 204171 33828223 ~ 33835034 (-) False zgc:172323
XM_021596357.2 mRNA downstream 204171 33828223 ~ 33835034 (-) True zgc:172323
XM_021596343.2 mRNA downstream 220955 33810645 ~ 33818250 (-) True prdm13
XM_021596338.2 mRNA downstream 525822 33507594 ~ 33513383 (-) True prss35
LOC110519190 mRNA upstream 4456 34045603 ~ 34046368 (-) True LOC110519190
XM_021596405.2 mRNA upstream 37051 34078198 ~ 34081695 (-) True pou3f2b
XM_036964818.1 mRNA upstream 47696 34088843 ~ 34248604 (-) True LOC110504035
XM_036973918.1 mRNA upstream 250363 34291510 ~ 34301358 (-) False klhl32
XM_036973919.1 mRNA upstream 250363 34291510 ~ 34301359 (-) False klhl32
TU283202 other downstream 619498 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 2458003 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3093362 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 3821616 30211570 ~ 30217589 (-) False G244393
TU284611 other upstream 316128 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 848359 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 854811 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 2098965 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 2316336 36357483 ~ 36357971 (-) True G251681

Expression Profile