RNA id: TCONS_00029317


Basic Information

Item Value
RNA id TCONS_00029317
length 622
RNA type mRNA
GC content 0.36
exon number 3
gene id XLOC_014851
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28281201 ~ 28283877 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCTTCCAAGGATCTTGTCCTTCGGTAAAAATACGAAGGTTTTGCTCAACTGTTTGAGATTATCAGCAGTTCCAGTTCAGCAGTACAGTGTTCCGGTTTCTAACCATGGAGAAATAATTACCCACACGGGACAGgTCTATGATGAAAATGATGTGAGACGTGCTAGATTTGTTGGCAGACATAAAGAGGTGAATGAGAACTTTGCAATCAACCTGGTTGCAGAAGAACCAGTCTCACATGTAGAGTCCAGGGTGGTGTCCTGTGATGGAGGCGGAGGGGCTCTCGGCCACCCCAAAGTTTACATCAATTTGGTAAACAAGTATTTCATATAAGAACAGTTtctaaatttgattaaaataaatatgtagagGCCAGGATCACGTTATTAAGTAATATGCAAATTTTTTGTGTATATACAGTGATTACTATTTACTCAATTTGAATGGTTTAAAAATGTCTGTAGATTAAACACATAAAACATGCAAATCCTGTAACATTTTATCATAAGCACACATTTGTCAtttaaacaaagatgaaaaaagcaTTATTTTCAAAAACTTTCAAGTTAAAAGCTGTATTTGAAGGTTAACATTTTCAAGCCTCTACATTTACAtatagtca

Function

GO:

id name namespace
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0016020 membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-040912-86 Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in cervical cancer and nuclear type mitochondrial complex I deficiency 9. Orthologous to human NDUFS6 (NADH:ubiquinone oxidoreductase subunit S6).

Ensembl:

ensembl_id ENSDART00000151756

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029786 lncRNA downstream 42480 28237921 ~ 28239057 (-) True XLOC_014850
TCONS_00029785 lncRNA downstream 42749 28237921 ~ 28238788 (-) False XLOC_014850
TCONS_00029312 lncRNA downstream 423522 27856723 ~ 27858015 (-) True XLOC_014847
TCONS_00029784 lncRNA downstream 478980 27802197 ~ 27802557 (-) True XLOC_014845
TCONS_00030256 lncRNA downstream 478993 27801055 ~ 27802544 (-) False XLOC_014845
TCONS_00030258 lncRNA upstream 210129 28493973 ~ 28780408 (-) False XLOC_014854
TCONS_00030259 lncRNA upstream 210129 28493973 ~ 28780408 (-) False XLOC_014854
TCONS_00030257 lncRNA upstream 210129 28493973 ~ 28780408 (-) False XLOC_014854
TCONS_00030260 lncRNA upstream 210129 28493973 ~ 28780411 (-) False XLOC_014854
TCONS_00030261 lncRNA upstream 210129 28493973 ~ 28780414 (-) False XLOC_014854
TCONS_00029315 mRNA downstream 150879 28127654 ~ 28130658 (-) True XLOC_014849
TCONS_00029314 mRNA downstream 314757 27957208 ~ 27966780 (-) True XLOC_014848
TCONS_00029313 mRNA downstream 315011 27957119 ~ 27966526 (-) False XLOC_014848
TCONS_00029310 mRNA downstream 423504 27836913 ~ 27858033 (-) False XLOC_014847
TCONS_00029318 mRNA upstream 72909 28356753 ~ 28360033 (-) False XLOC_014852
TCONS_00029319 mRNA upstream 72909 28356753 ~ 28367413 (-) True XLOC_014852
TCONS_00029324 mRNA upstream 450204 28734048 ~ 28788466 (-) False XLOC_014854
TCONS_00029325 mRNA upstream 502305 28786149 ~ 28789409 (-) True XLOC_014854
TCONS_00029327 mRNA upstream 990541 29274385 ~ 29294457 (-) False XLOC_014861
TCONS_00029305 other downstream 675797 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029303 other downstream 696800 27581750 ~ 27584737 (-) True XLOC_014841
TCONS_00029297 other downstream 706443 27571706 ~ 27575094 (-) True XLOC_014839
TCONS_00029289 other downstream 813022 27468449 ~ 27468515 (-) True XLOC_014836
TCONS_00029288 other downstream 816135 27465336 ~ 27465402 (-) False XLOC_014836
TCONS_00029320 other upstream 157997 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029333 other upstream 1501251 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029339 other upstream 1578015 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029343 other upstream 2065459 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029352 other upstream 2145488 30429332 ~ 30431750 (-) False XLOC_014875

Expression Profile

//