RNA id: TU284635


Basic Information

Item Value
RNA id TU284635
length 1085
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G249502
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34470171 ~ 34471282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAATCAGTCGGTCCAGCTCTGACGAATCAGAGCAAGCCCTGGGCCCAGACTGAATGGTTGTACACAAACACATCTACGGAGCTGTGTGGAGCAGAAAAAAAGACCACCCTTCCATCTGTCAATCTGGTTTAATGTCGAAATAGGCCTGAAAGGAGACGATTAGAGATCCTATACAGGTGCCTTCAGAGCAGAACTCAAAAACGGCAGGTCTTTCAACATTGGAAATGGAGCTAAAGGGGAGTCCACCAACCTAATTGATTTAGTTTTTCCTGAAGGTCATGATGCCCTGTTGCCTGGCCTGCTTCCCAGTCTGGGATGAACAACATTAGATAGACATTTGGTCAATGATGCCAACTAGTGGACAAAGCAGGAAACACAGGCCTCACTGGAAACtggtatgtgtgtttatgtatgcacAGGACAGATGGAAACTGACAGAAGAGCAATGATTTAAGTATATTTATAATTTTAAATTATTTCTTAAATAGCTACGATAACAAAGGCCCAACCCCTTGCACATTCATGATgatataGATCTGAAGTTGAGCCCTTAACTCCCCACCATGGTATAAAAGCAAAAAGAAGATTGATACAGATCAAGAAAAAAAGAAATCTTGTGTCTCAAAGAATTGGGGGTGGAAGGAGCACAGATGGTTCACTGGGGGGTAGTCCTGAATCAGGACAAGGGGTGACAGGGAAGGATGGGGGATACAAATATTGGTTACGGGTATAGTAATTGATGCAGGGAATCTTGCTGGGTTAAGAGGGAGTAAATGGCTATAGTAAATGTAGTCCAGGGTTGGGCAAGTGTGGTTAAAATGTTCCACGGTTTGGTTAAGTGTGGTACGATGGCTATAGGTAGGAGATTGATGCGTGTTCCAGGATTGAGTGGTGTCAGGGTGGGTTCCTCTGAGGTTGTTGTTGAAGATTGTAGGGCTAGTAGTGGTTGTAGGGCAGTCTGATTCTTTCCTTCTCCTTAACTCCCTGTCAATGTCTAAATGAATCCTGGGAAGAGGTGCTGCAGGAGCAGGACAGCTCCCACCACCATGAGGCCACAGAAGAACAGCACCAGCCAGATAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284637 lncRNA downstream 14546 34454200 ~ 34455625 (-) True adcy3a
TU284670 lncRNA downstream 25625 34444219 ~ 34444546 (-) True G249537
TU284633 lncRNA downstream 41133 34428776 ~ 34429038 (-) False adcy3a
TU284632 lncRNA downstream 41805 34427885 ~ 34428366 (-) True G249499
TU284630 lncRNA downstream 42526 34426946 ~ 34427645 (-) True G249497
TU284678 lncRNA upstream 1312 34472594 ~ 34472798 (-) True G249545
TU284679 lncRNA upstream 1964 34473246 ~ 34473547 (-) True G249546
TU284680 lncRNA upstream 3896 34475178 ~ 34475497 (-) True G249547
TU284686 lncRNA upstream 11748 34483030 ~ 34483267 (-) True G249553
TU284689 lncRNA upstream 15250 34486532 ~ 34486739 (-) True G249556
XM_036973927.1 mRNA downstream 13369 34429780 ~ 34456802 (-) False adcy3a
XM_036973929.1 mRNA downstream 13377 34429780 ~ 34456794 (-) False adcy3a
XM_036973926.1 mRNA downstream 15881 34428583 ~ 34454290 (-) False adcy3a
XM_036973928.1 mRNA downstream 15881 34430409 ~ 34454290 (-) False adcy3a
XM_036973925.1 mRNA downstream 44000 34413649 ~ 34426171 (-) False LOC110519296
XM_021596492.2 mRNA upstream 28863 34500145 ~ 34506986 (-) True LOC110519356
XM_021596503.2 mRNA upstream 105788 34577070 ~ 34613851 (-) True tgfb2
XR_002472830.2 mRNA upstream 125618 34596900 ~ 34601665 (-) True LOC110519379
XM_021596522.2 mRNA upstream 145450 34616732 ~ 34626850 (-) False LOC110519387
XM_021596517.2 mRNA upstream 145450 34616732 ~ 34629138 (-) False LOC110519387
TU284611 other downstream 110720 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1050464 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 2888969 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3524328 30944953 ~ 30945843 (-) True G245366
TU279014 other downstream 4253059 30211570 ~ 30217112 (-) False G244393
TU285130 other upstream 418224 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 424676 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1668830 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1886201 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 2260563 36731845 ~ 36733440 (-) True gpatch3

Expression Profile