RNA id: TCONS_00030258


Basic Information

Item Value
RNA id TCONS_00030258
length 1064
lncRNA type sense_over
GC content 0.46
exon number 5
gene id XLOC_014854
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28493973 ~ 28789409 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAGCGCATCATCAATACAACCAAACATCCGAACGCGGAAAGTTTTGCGCTTATGGATTATAACGACAAAACGGGATTGCCTCTCAGTGGACCTCCACACGTGTTTGACAAAACTCTCCGAAGATGACATCCTGACGTAGGTTCTTGTGTGGGAGCTGAGGTCTTTTCCCAGACACAACAGAAGCCAGAGCCTGTGGTTGATTTCATGACTTCCTCCTCATTGTTTGCCTGTCTGCGTGACTGGAAACCGGCAGTGACAGACCGATGACTCCGGCCTCTCTTTAACCAGGCTTGTGGAGAAACTGGACCTGGCTCCCTCTGAAGTATTGGAGTTCAGCAGCAAAGAGCATCAGGAAGCATTACCACATCACTCACAGTTCAGCTCTCCGGCAATGCCCTGACCTCCTGAACCCTGACCTTAAATGACCTCTCTTCGTACTCTCGGTTTAACTAGCTCAGCGGCTCTCAGTATCAGATCCGGAGGGAAAGAGAGAGGAGAGAACGAGGAGACGCATCAGGATACCAGCCCGCCTGGAGCTGCACCCAAACATCAAGGGAGTCTGGGTTTCAGCAGCCAGCCAAATTTTCCATCAATTTCCATACATATATTGTTGCGTAAACAGAAGCAAGCGGTCCAGAGCACTCCTTCCAGAGCCGGCAAAATGCAGAGACCCTGATGAAGACAGATCCTATCGTTAACTCTGCACACACAGAGGGCCCCATGGGGAACCGTGTAAATGCTACTAGCCTTTTCTCCTAATGTAGGTGTCTCTGTTATAGATTGTTTGCCATTTTGAAAAATATGCAACCCTGTGTTTCACcattttttacttcttttcttgAGGTGCACCAACGCTATGCATGTTTGCGACACTAAGAATATACTCAGTCATTATGCTAATACTCACTGCTTGAGACTTTTACATTTTAGCGGTTATACTCATGCATGTCAGATTCAGTTTTATTTGACTAAGCTTGGTTGAGCTTTTTTGTTGATGCATAAAATGGGACAATCCTATAGTACTTtgaatactgtaaaaataaactgTCACATTATTGAAAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0042330 taxis biological_process
GO:0030900 forebrain development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029786 lncRNA downstream 254916 28237921 ~ 28239057 (-) True XLOC_014850
TCONS_00029785 lncRNA downstream 255185 28237921 ~ 28238788 (-) False XLOC_014850
TCONS_00029312 lncRNA downstream 635958 27856723 ~ 27858015 (-) True XLOC_014847
TCONS_00029784 lncRNA downstream 691416 27802197 ~ 27802557 (-) True XLOC_014845
TCONS_00030256 lncRNA downstream 691429 27801055 ~ 27802544 (-) False XLOC_014845
TCONS_00030265 lncRNA upstream 37213 28817621 ~ 28821225 (-) False XLOC_014856
TCONS_00030269 lncRNA upstream 37213 28817621 ~ 28824390 (-) False XLOC_014856
TCONS_00030270 lncRNA upstream 37213 28817621 ~ 28824390 (-) False XLOC_014856
TCONS_00030268 lncRNA upstream 37213 28817621 ~ 28824390 (-) False XLOC_014856
TCONS_00030267 lncRNA upstream 37213 28817621 ~ 28824390 (-) False XLOC_014856
TCONS_00029319 mRNA downstream 126560 28356753 ~ 28367413 (-) True XLOC_014852
TCONS_00029318 mRNA downstream 133940 28356753 ~ 28360033 (-) False XLOC_014852
TCONS_00029316 mRNA downstream 210096 28281201 ~ 28283877 (-) False XLOC_014851
TCONS_00029317 mRNA downstream 210129 28281537 ~ 28283844 (-) True XLOC_014851
TCONS_00029315 mRNA downstream 363315 28127654 ~ 28130658 (-) True XLOC_014849
TCONS_00029325 mRNA upstream 5741 28786149 ~ 28789409 (-) True XLOC_014854
TCONS_00029327 mRNA upstream 493977 29274385 ~ 29294457 (-) False XLOC_014861
TCONS_00029328 mRNA upstream 509913 29290321 ~ 29294457 (-) True XLOC_014861
TCONS_00029329 mRNA upstream 515783 29296191 ~ 29303788 (-) False XLOC_014862
TCONS_00029330 mRNA upstream 516994 29297402 ~ 29302249 (-) True XLOC_014862
TCONS_00029320 other downstream 52013 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029305 other downstream 888233 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029303 other downstream 909236 27581750 ~ 27584737 (-) True XLOC_014841
TCONS_00029297 other downstream 918879 27571706 ~ 27575094 (-) True XLOC_014839
TCONS_00029289 other downstream 1025458 27468449 ~ 27468515 (-) True XLOC_014836
TCONS_00029333 other upstream 1004687 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029339 other upstream 1081451 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029343 other upstream 1568895 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029352 other upstream 1648924 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029367 other upstream 1972401 30752809 ~ 30799963 (-) True XLOC_014881

Expression Profile

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