RNA id: TU284706



Basic Information


Item Value
RNA id TU284706
length 621
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G249573
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34523685 ~ 34524305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatataacagcctccactcttctgagaaggctttctaCTATAtaggcttgcgaaagtattcatcccccttggcatttttcgtattttgttgccttacaacctggaattaaaattgctTTTTTTCGGGGTTTGTAtcgtttgatttacacaacataccactttgaagatgcaaaatatgtgtaacggttttcttggtgagaaggagagtcggaccaaaatgcagcgtgtagattgcgatccatgtttattcaacaaacgaaacacgaatctaaatacaaacactacaaaacaataaacgtaacgaaaaccgaaacagcctatactatACTAACACAGaataaggacatcaagacactaaggacaatcacccacaacaaactcaaagaatatggctgcctaaatatggttcccaatcagagacaacgataaacacctgcctctgattgagaaccacttcagacagccatagacttagctagaacaccccactagctacaatccccatacatacacaccacatacaaaaacccatgccacaccctggcctgacccaatacatgaagaaaaacacaaaatacttagaccagggcgtgacaatatgttttattgtgaaacaaacaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU284702 lncRNA downstream 7661 34515801 ~ 34516024 (-) True G249569
TU284696 lncRNA downstream 16133 34507325 ~ 34507552 (-) True G249563
TU284691 lncRNA downstream 35689 34487752 ~ 34487996 (-) True G249558
TU284689 lncRNA downstream 36946 34486532 ~ 34486739 (-) True G249556
TU284686 lncRNA downstream 40418 34483030 ~ 34483267 (-) True G249553
TU284733 lncRNA upstream 33531 34557836 ~ 34558246 (-) True G249598
TU284741 lncRNA upstream 49941 34574246 ~ 34574605 (-) True G249606
TU284742 lncRNA upstream 50630 34574935 ~ 34575234 (-) True G249607
TU284796 lncRNA upstream 122482 34646787 ~ 34647051 (-) True G249661
TU284802 lncRNA upstream 126952 34651257 ~ 34651506 (-) True G249667
XM_021596492.2 mRNA downstream 16699 34500145 ~ 34506986 (-) True LOC110519356
XM_036973927.1 mRNA downstream 66883 34429780 ~ 34456802 (-) False adcy3a
XM_036973929.1 mRNA downstream 66891 34429780 ~ 34456794 (-) False adcy3a
XM_036973926.1 mRNA downstream 69395 34428583 ~ 34454290 (-) False adcy3a
XM_021596503.2 mRNA upstream 52765 34577070 ~ 34613851 (-) True tgfb2
XR_002472830.2 mRNA upstream 72595 34596900 ~ 34601665 (-) True LOC110519379
XM_021596522.2 mRNA upstream 92427 34616732 ~ 34626850 (-) False LOC110519387
XM_021596517.2 mRNA upstream 92427 34616732 ~ 34629138 (-) False LOC110519387
XM_036973931.1 mRNA upstream 92427 34616732 ~ 34629879 (-) True LOC110519387
TU284611 other downstream 164234 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1103978 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 2942483 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3577842 30944953 ~ 30945843 (-) True G245366
TU279014 other downstream 4306573 30211570 ~ 30217112 (-) False G244393
TU285130 other upstream 365201 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 371653 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1615807 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1833178 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 2207540 36731845 ~ 36733440 (-) True gpatch3

Expression Profile