RNA id: TU285168



Basic Information


Item Value
RNA id TU285168
length 250
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G250016
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34915098 ~ 34915347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tagattctcaaagcacttcatgatgacagaagtgagtgctacggggcgatagtcaacgcattcagttacctttgctttcttgggtacaaaaacaatggtggccatcttgaagcatgtggggacagctgacttggatagggagagattgaatatgtctgtaaacacaccaggcagTTGGTCTGCGGATGCTctgatgcggctagggatgcagtctgggccggcagccttgcgagggttaacacgcttaacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU285161 lncRNA upstream 5803 34908810 ~ 34909295 (+) True G250009
TU285140 lncRNA upstream 19634 34894997 ~ 34895464 (+) True G249988
TU285105 lncRNA upstream 33832 34880935 ~ 34881266 (+) True G249953
TU284920 lncRNA upstream 184503 34729824 ~ 34730595 (+) True G249778
TU284898 lncRNA upstream 200010 34714815 ~ 34715088 (+) True G249758
TU285181 lncRNA downstream 53511 34968858 ~ 34982923 (+) True G250029
TU285328 lncRNA downstream 130799 35046146 ~ 35046501 (+) True G250150
TU285336 lncRNA downstream 144179 35059526 ~ 35059740 (+) True G250158
TU285337 lncRNA downstream 144452 35059799 ~ 35060015 (+) True G250159
TU285338 lncRNA downstream 144908 35060255 ~ 35060482 (+) True G250160
LOC110504041 mRNA upstream 239123 34671886 ~ 34675975 (+) False LOC110504041
XR_005039848.1 mRNA upstream 248244 34665596 ~ 34666854 (+) True LOC118944510
LOC118964383 mRNA upstream 330607 34584351 ~ 34584491 (+) True LOC118964383
XM_021596477.2 mRNA upstream 443503 34458503 ~ 34471595 (+) False LOC110519336
XM_021596528.2 mRNA downstream 75676 34991023 ~ 35038369 (+) False LOC110519409
XM_021596552.2 mRNA downstream 75676 34991023 ~ 35038369 (+) False LOC110519409
XM_021596567.2 mRNA downstream 75676 34991023 ~ 35038369 (+) False LOC110519409
XM_021596570.2 mRNA downstream 75676 34991023 ~ 35038369 (+) False LOC110519409
XM_021596574.2 mRNA downstream 75676 34991023 ~ 35038369 (+) False LOC110519409
TU284433 other upstream 494486 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 612191 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 902041 34006158 ~ 34013057 (+) True G248795
TU283831 other upstream 937263 33974476 ~ 33977835 (+) True G248794
TU283768 other upstream 1079823 33828220 ~ 33835275 (+) True G248750
TU285376 other downstream 238355 35153702 ~ 35173463 (+) True rab42b
TU285526 other downstream 304485 35219832 ~ 35221372 (+) True LOC110519579
TU287065 other downstream 1596227 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 1708263 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 2811601 37726948 ~ 37727338 (+) True G253299

Expression Profile