RNA id: TU285181


Basic Information

Item Value
RNA id TU285181
length 1429
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G250029
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34968858 ~ 34982923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAGTCAACTGACAGGCCAGTACAACATTGGTGCCCGAAGACCTATAAAAGAATGCACAACTTGACGTACCTTGACACGAATGGGgaaatttccacgacatttgGCGCAGAGGATGGGATGTGAATCTTCACTTGGTGACCGTTCCTGACGATCTAGGTAAATAAATCGTGCACGAGGGATCCCTCAAACGTGGGATCTTAGGGAAACCACACTTCGGGAACAAAGCAGATGGACCAACCTTTGATCTGAGAGGAagcgagccgagtggataccacatctcgaacagagtttttttaaagaaaaagGTGATCATGAAAAGTGACATCAGATGGTATCTTAATGCATGGAAGAGATAATTGGACCGAATAGCGTGTGTacctcaaaaccccctctaacTGACTGAAGAAGAGTGACAAAGGCGTTGAATAAGGCCCTTCCAAGCCACTTCTACCGAGAGAAAGGAACCAAGCCAGAAATCGGTGTACAGTATCAGATCTAAACTAttaactgcttttctttcatgctTCTCTCAGTCCACATGGAGTGATCATGGAGAGAGATCTGTTCTAACTTTTTCTTATGGTACTGGTATATTGGTTGACGAATGGACAAGACATGAGtggtaaagatgagacattgaaattggAACATTATCATGGGCCATCCATTTTGAACTGTAAAGCTATCTGAAGAAGAACGAAAAGGACGCCAGAAGAATCAGTGCCTGATAAAATTGCTTTATACTTTTGTGGTATCAGGTTGATTGTAGAGGTCTACACCATGTAAAATTATAGTCATTTAGATTacgaatgcattgagatactgatctgtattaTAATCATGATTAAAAAAGTTAATGGTAGAATTATGAGATAATTATACTGAATGAATGTAAAATCTGCTAATACTGAATTGAGGTTTTTACTTTGAGTGATAAGACCAATTTGAATTACTGAGGAATGTCATTCTAAGTTTTGGTTGGATAAATAGTTGGGTTGTTAATTATGATTTGGAAAATGAATGATTTTACATTTGAAGAACTACATGGAGTACTGTCTGGTGTGGTCCCACCCTCTCAGACCCCAGAGCTTGAGCAGGGTATTTTAGTTTTTGAAGGAGCGGGagtgtatatattttatattttgtagTGTGTGAATGAATGTTAATTTTCCCTTTCCCGTATGGTAATTATTTTACCCCTATCCAGTACATATTCTGAGTATACTGCCCTACGAAGCAAACAGGCAGTAATTGCTCATTTGGTCGAAAATGACTTAGTTATTTTTGCTACATTAAATGCATGCTTAATCATGTGGGCAcgtatcctgcctctattgtattgtgttctggagaaaatgggggtcatgttagcagtaactgcataAAGTTATTGTGAACCAAGGCAAATAAAAgccatttttctcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285168 lncRNA upstream 53511 34915098 ~ 34915347 (+) True G250016
TU285161 lncRNA upstream 59563 34908810 ~ 34909295 (+) True G250009
TU285140 lncRNA upstream 73394 34894997 ~ 34895464 (+) True G249988
TU285105 lncRNA upstream 87592 34880935 ~ 34881266 (+) True G249953
TU284920 lncRNA upstream 238263 34729824 ~ 34730595 (+) True G249778
TU285328 lncRNA downstream 63223 35046146 ~ 35046501 (+) True G250150
TU285336 lncRNA downstream 76603 35059526 ~ 35059740 (+) True G250158
TU285337 lncRNA downstream 76876 35059799 ~ 35060015 (+) True G250159
TU285338 lncRNA downstream 77332 35060255 ~ 35060482 (+) True G250160
TU285600 lncRNA downstream 278287 35261210 ~ 35261419 (+) True G250398
LOC110504041 mRNA upstream 292883 34671886 ~ 34675975 (+) False LOC110504041
XR_005039848.1 mRNA upstream 302004 34665596 ~ 34666854 (+) True LOC118944510
LOC118964383 mRNA upstream 384367 34584351 ~ 34584491 (+) True LOC118964383
XM_021596477.2 mRNA upstream 497263 34458503 ~ 34471595 (+) False LOC110519336
XM_021596528.2 mRNA downstream 8100 34991023 ~ 35038369 (+) False LOC110519409
XM_021596552.2 mRNA downstream 8100 34991023 ~ 35038369 (+) False LOC110519409
XM_021596567.2 mRNA downstream 8100 34991023 ~ 35038369 (+) False LOC110519409
XM_021596570.2 mRNA downstream 8100 34991023 ~ 35038369 (+) False LOC110519409
XM_021596574.2 mRNA downstream 8100 34991023 ~ 35038369 (+) False LOC110519409
TU284433 other upstream 548246 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 665951 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 955801 34006158 ~ 34013057 (+) True G248795
TU283831 other upstream 991023 33974476 ~ 33977835 (+) True G248794
TU283768 other upstream 1133583 33828220 ~ 33835275 (+) True G248750
TU285376 other downstream 170779 35153702 ~ 35173463 (+) True rab42b
TU285526 other downstream 236909 35219832 ~ 35221372 (+) True LOC110519579
TU287065 other downstream 1528651 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 1640687 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 2744025 37726948 ~ 37727338 (+) True G253299

Expression Profile